Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK71489.1 | ABK71532.1 | MSMEG_3029 | MSMEG_5457 | Peptidase, A24 (type IV prepilin peptidase) family protein; Identified by match to protein family HMM PF01478. | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 0.510 |
| ABK71489.1 | ABK75112.1 | MSMEG_3029 | MSMEG_6704 | Peptidase, A24 (type IV prepilin peptidase) family protein; Identified by match to protein family HMM PF01478. | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 0.440 |
| ABK71489.1 | aroB | MSMEG_3029 | MSMEG_3033 | Peptidase, A24 (type IV prepilin peptidase) family protein; Identified by match to protein family HMM PF01478. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.658 |
| ABK71489.1 | aroC | MSMEG_3029 | MSMEG_3030 | Peptidase, A24 (type IV prepilin peptidase) family protein; Identified by match to protein family HMM PF01478. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.672 |
| ABK71489.1 | aroE | MSMEG_3029 | MSMEG_3028 | Peptidase, A24 (type IV prepilin peptidase) family protein; Identified by match to protein family HMM PF01478. | Shikimate-5-dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM TIGR01809; Belongs to the shikimate dehydrogenase family. | 0.932 |
| ABK71489.1 | aroK-2 | MSMEG_3029 | MSMEG_3031 | Peptidase, A24 (type IV prepilin peptidase) family protein; Identified by match to protein family HMM PF01478. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.691 |
| ABK71489.1 | mltG | MSMEG_3029 | MSMEG_3027 | Peptidase, A24 (type IV prepilin peptidase) family protein; Identified by match to protein family HMM PF01478. | Conserved hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.909 |
| ABK71532.1 | ABK71489.1 | MSMEG_5457 | MSMEG_3029 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Peptidase, A24 (type IV prepilin peptidase) family protein; Identified by match to protein family HMM PF01478. | 0.510 |
| ABK71532.1 | ABK75112.1 | MSMEG_5457 | MSMEG_6704 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 0.961 |
| ABK71532.1 | aroA | MSMEG_5457 | MSMEG_1890 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.665 |
| ABK71532.1 | aroB | MSMEG_5457 | MSMEG_3033 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.577 |
| ABK71532.1 | aroC | MSMEG_5457 | MSMEG_3030 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.767 |
| ABK71532.1 | aroE | MSMEG_5457 | MSMEG_3028 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Shikimate-5-dehydrogenase; Identified by match to protein family HMM PF01488; match to protein family HMM TIGR01809; Belongs to the shikimate dehydrogenase family. | 0.929 |
| ABK71532.1 | aroK-2 | MSMEG_5457 | MSMEG_3031 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.950 |
| ABK71532.1 | aroQ | MSMEG_5457 | MSMEG_1922 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.930 |
| ABK71532.1 | aroQ-2 | MSMEG_5457 | MSMEG_2532 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Dehydroquinase dehydratase, type II; Identified by match to protein family HMM PF01220. | 0.930 |
| ABK71532.1 | mltG | MSMEG_5457 | MSMEG_3027 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Conserved hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.466 |
| ABK75112.1 | ABK71489.1 | MSMEG_6704 | MSMEG_3029 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Peptidase, A24 (type IV prepilin peptidase) family protein; Identified by match to protein family HMM PF01478. | 0.440 |
| ABK75112.1 | ABK71532.1 | MSMEG_6704 | MSMEG_5457 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 0.961 |
| ABK75112.1 | aroA | MSMEG_6704 | MSMEG_1890 | Shikimate 5-dehydrogenase; Identified by match to protein family HMM PF01488. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.652 |
page 1 of 5