STRINGSTRING
ABK73340.1 ABK73340.1 ABK70399.1 ABK70399.1 ABK73249.1 ABK73249.1 ABK74610.1 ABK74610.1 ABK76239.1 ABK76239.1 whiB7 whiB7 ABK70024.1 ABK70024.1 ABK73356.1 ABK73356.1 ABK71145.1 ABK71145.1 ABK72784.1 ABK72784.1 pks5 pks5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ABK73340.1Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. (402 aa)    
Predicted Functional Partners:
ABK70399.1
Identified by match to protein family HMM PF00440.
     
 0.648
ABK73249.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
  
    0.607
ABK74610.1
Thiopurine S-methyltransferase (tpmt) superfamily protein; Identified by match to protein family HMM PF03848; match to protein family HMM PF05724.
 
    0.577
ABK76239.1
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
  
     0.528
whiB7
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (By similarity). Participates in maintaining a reduced cytoplasmic (MSH/MSSM) environment under normal growth conditions and directly or indirectly controls the concentration of mycothiol (MSH + MSSM).
   
  
 0.524
ABK70024.1
C-5 sterol desaturase.
   
 
 0.515
ABK73356.1
C-5 sterol desaturase.
   
 
 0.514
ABK71145.1
Fatty acid hydroxylase; Identified by match to protein family HMM PF04116.
   
 
 0.513
ABK72784.1
C-5 sterol desaturase.
   
 
 0.508
pks5
Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.
 
 
 0.452
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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