Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70024.1 | ABK73340.1 | MSMEG_0147 | MSMEG_3039 | C-5 sterol desaturase. | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.515 |
ABK70024.1 | ABK76239.1 | MSMEG_0147 | MSMEG_1649 | C-5 sterol desaturase. | FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.514 |
ABK70399.1 | ABK73340.1 | MSMEG_3319 | MSMEG_3039 | Identified by match to protein family HMM PF00440. | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.648 |
ABK71145.1 | ABK73340.1 | MSMEG_3529 | MSMEG_3039 | Fatty acid hydroxylase; Identified by match to protein family HMM PF04116. | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.513 |
ABK71145.1 | ABK76239.1 | MSMEG_3529 | MSMEG_1649 | Fatty acid hydroxylase; Identified by match to protein family HMM PF04116. | FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.580 |
ABK72784.1 | ABK73340.1 | MSMEG_3666 | MSMEG_3039 | C-5 sterol desaturase. | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.508 |
ABK72784.1 | ABK76239.1 | MSMEG_3666 | MSMEG_1649 | C-5 sterol desaturase. | FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.515 |
ABK73249.1 | ABK73340.1 | MSMEG_3040 | MSMEG_3039 | Beta-lactamase; Identified by match to protein family HMM PF00144. | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.607 |
ABK73249.1 | ABK74610.1 | MSMEG_3040 | MSMEG_3041 | Beta-lactamase; Identified by match to protein family HMM PF00144. | Thiopurine S-methyltransferase (tpmt) superfamily protein; Identified by match to protein family HMM PF03848; match to protein family HMM PF05724. | 0.703 |
ABK73340.1 | ABK70024.1 | MSMEG_3039 | MSMEG_0147 | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | C-5 sterol desaturase. | 0.515 |
ABK73340.1 | ABK70399.1 | MSMEG_3039 | MSMEG_3319 | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | Identified by match to protein family HMM PF00440. | 0.648 |
ABK73340.1 | ABK71145.1 | MSMEG_3039 | MSMEG_3529 | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | Fatty acid hydroxylase; Identified by match to protein family HMM PF04116. | 0.513 |
ABK73340.1 | ABK72784.1 | MSMEG_3039 | MSMEG_3666 | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | C-5 sterol desaturase. | 0.508 |
ABK73340.1 | ABK73249.1 | MSMEG_3039 | MSMEG_3040 | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | Beta-lactamase; Identified by match to protein family HMM PF00144. | 0.607 |
ABK73340.1 | ABK73356.1 | MSMEG_3039 | MSMEG_2812 | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | C-5 sterol desaturase. | 0.514 |
ABK73340.1 | ABK74610.1 | MSMEG_3039 | MSMEG_3041 | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | Thiopurine S-methyltransferase (tpmt) superfamily protein; Identified by match to protein family HMM PF03848; match to protein family HMM PF05724. | 0.577 |
ABK73340.1 | ABK76239.1 | MSMEG_3039 | MSMEG_1649 | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.528 |
ABK73340.1 | pks5 | MSMEG_3039 | MSMEG_4727 | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis. | 0.452 |
ABK73340.1 | whiB7 | MSMEG_3039 | MSMEG_1953 | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (By similarity). Participates in maintaining a reduced cytoplasmic (MSH/MSSM) environment under normal growth conditions and directly or indirectly controls the concentration of mycothiol (MSH + MSSM). | 0.524 |
ABK73356.1 | ABK73340.1 | MSMEG_2812 | MSMEG_3039 | C-5 sterol desaturase. | Monooxygenase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. | 0.514 |
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