Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK69890.1 | ABK71039.1 | MSMEG_4628 | MSMEG_3074 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.742 |
ABK69890.1 | ABK76005.1 | MSMEG_4628 | MSMEG_4238 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.771 |
ABK71039.1 | ABK69890.1 | MSMEG_3074 | MSMEG_4628 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.742 |
ABK71039.1 | ABK76005.1 | MSMEG_3074 | MSMEG_4238 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.760 |
ABK71039.1 | ABK76141.1 | MSMEG_3074 | MSMEG_3050 | Conserved hypothetical protein. | Integration host factor. | 0.755 |
ABK71039.1 | metK | MSMEG_3074 | MSMEG_3055 | Conserved hypothetical protein. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.773 |
ABK71039.1 | ribBA | MSMEG_3074 | MSMEG_3072 | Conserved hypothetical protein. | Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.922 |
ABK71039.1 | ribE-2 | MSMEG_3074 | MSMEG_3073 | Conserved hypothetical protein. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.939 |
ABK71039.1 | rpsC | MSMEG_3074 | MSMEG_1442 | Conserved hypothetical protein. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.750 |
ABK71039.1 | rpsL | MSMEG_3074 | MSMEG_1398 | Conserved hypothetical protein. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.756 |
ABK71039.1 | rpsQ | MSMEG_3074 | MSMEG_1445 | Conserved hypothetical protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.751 |
ABK71039.1 | rpsS | MSMEG_3074 | MSMEG_1440 | Conserved hypothetical protein. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.778 |
ABK76005.1 | ABK69890.1 | MSMEG_4238 | MSMEG_4628 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.771 |
ABK76005.1 | ABK71039.1 | MSMEG_4238 | MSMEG_3074 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.760 |
ABK76141.1 | ABK71039.1 | MSMEG_3050 | MSMEG_3074 | Integration host factor. | Conserved hypothetical protein. | 0.755 |
ABK76141.1 | metK | MSMEG_3050 | MSMEG_3055 | Integration host factor. | S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.574 |
ABK76141.1 | rpsC | MSMEG_3050 | MSMEG_1442 | Integration host factor. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.981 |
ABK76141.1 | rpsL | MSMEG_3050 | MSMEG_1398 | Integration host factor. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.981 |
ABK76141.1 | rpsQ | MSMEG_3050 | MSMEG_1445 | Integration host factor. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.981 |
ABK76141.1 | rpsS | MSMEG_3050 | MSMEG_1440 | Integration host factor. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.981 |
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