Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK73776.1 | cyoE | MSMEG_3104 | MSMEG_3105 | Hypothetical protein; Identified by Glimmer2; putative. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.704 |
| ABK73776.1 | opcA | MSMEG_3104 | MSMEG_3100 | Hypothetical protein; Identified by Glimmer2; putative. | OpcA protein; Identified by match to protein family HMM TIGR00534. | 0.471 |
| ABK73776.1 | pgl | MSMEG_3104 | MSMEG_3099 | Hypothetical protein; Identified by Glimmer2; putative. | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. | 0.464 |
| ABK73776.1 | tal | MSMEG_3104 | MSMEG_3102 | Hypothetical protein; Identified by Glimmer2; putative. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily. | 0.493 |
| ABK73776.1 | tkt | MSMEG_3104 | MSMEG_3103 | Hypothetical protein; Identified by Glimmer2; putative. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.557 |
| ABK73776.1 | zwf-2 | MSMEG_3104 | MSMEG_3101 | Hypothetical protein; Identified by Glimmer2; putative. | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. | 0.484 |
| cyoE | ABK73776.1 | MSMEG_3105 | MSMEG_3104 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | Hypothetical protein; Identified by Glimmer2; putative. | 0.704 |
| cyoE | opcA | MSMEG_3105 | MSMEG_3100 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | OpcA protein; Identified by match to protein family HMM TIGR00534. | 0.609 |
| cyoE | pgl | MSMEG_3105 | MSMEG_3099 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. | 0.575 |
| cyoE | tal | MSMEG_3105 | MSMEG_3102 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily. | 0.620 |
| cyoE | tkt | MSMEG_3105 | MSMEG_3103 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.677 |
| cyoE | zwf-2 | MSMEG_3105 | MSMEG_3101 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. | 0.553 |
| opcA | ABK73776.1 | MSMEG_3100 | MSMEG_3104 | OpcA protein; Identified by match to protein family HMM TIGR00534. | Hypothetical protein; Identified by Glimmer2; putative. | 0.471 |
| opcA | cyoE | MSMEG_3100 | MSMEG_3105 | OpcA protein; Identified by match to protein family HMM TIGR00534. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.609 |
| opcA | pgl | MSMEG_3100 | MSMEG_3099 | OpcA protein; Identified by match to protein family HMM TIGR00534. | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. | 0.995 |
| opcA | tal | MSMEG_3100 | MSMEG_3102 | OpcA protein; Identified by match to protein family HMM TIGR00534. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily. | 0.923 |
| opcA | tkt | MSMEG_3100 | MSMEG_3103 | OpcA protein; Identified by match to protein family HMM TIGR00534. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.887 |
| opcA | zwf-2 | MSMEG_3100 | MSMEG_3101 | OpcA protein; Identified by match to protein family HMM TIGR00534. | Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. | 0.974 |
| pgl | ABK73776.1 | MSMEG_3099 | MSMEG_3104 | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. | Hypothetical protein; Identified by Glimmer2; putative. | 0.464 |
| pgl | cyoE | MSMEG_3099 | MSMEG_3105 | 6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate. | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. | 0.575 |
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