Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK72617.1 | ABK73030.1 | MSMEG_3130 | MSMEG_3128 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.631 |
ABK72617.1 | ABK75623.1 | MSMEG_3130 | MSMEG_3129 | Hypothetical protein; Identified by Glimmer2; putative. | Putative HTH-type transcriptional regulator; Identified by match to protein family HMM PF00440. | 0.632 |
ABK73030.1 | ABK72617.1 | MSMEG_3128 | MSMEG_3130 | Hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.631 |
ABK73030.1 | ABK75623.1 | MSMEG_3128 | MSMEG_3129 | Hypothetical protein; Identified by Glimmer2; putative. | Putative HTH-type transcriptional regulator; Identified by match to protein family HMM PF00440. | 0.778 |
ABK73030.1 | ribD | MSMEG_3128 | MSMEG_3067 | Hypothetical protein; Identified by Glimmer2; putative. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.601 |
ABK75623.1 | ABK72617.1 | MSMEG_3129 | MSMEG_3130 | Putative HTH-type transcriptional regulator; Identified by match to protein family HMM PF00440. | Hypothetical protein; Identified by Glimmer2; putative. | 0.632 |
ABK75623.1 | ABK73030.1 | MSMEG_3129 | MSMEG_3128 | Putative HTH-type transcriptional regulator; Identified by match to protein family HMM PF00440. | Hypothetical protein; Identified by Glimmer2; putative. | 0.778 |
ribD | ABK73030.1 | MSMEG_3067 | MSMEG_3128 | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.601 |