STRINGSTRING
trx trx trxB trxB ABK72676.1 ABK72676.1 selD selD ABK73212.1 ABK73212.1 ABK74166.1 ABK74166.1 ABK74617.1 ABK74617.1 ABK72488.1 ABK72488.1 ABK72744.1 ABK72744.1 ABK75427.1 ABK75427.1 ABK71010.1 ABK71010.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxThioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family. (124 aa)    
Predicted Functional Partners:
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292.
 
 0.993
ABK72676.1
Thioredoxin reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF00072; match to protein family HMM PF01266; match to protein family HMM PF07992.
  
 0.984
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
  
 
 0.913
ABK73212.1
Putative cystathionine gamma-synthase; Identified by match to protein family HMM PF01053.
  
 
 0.911
ABK74166.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
  0.906
ABK74617.1
Cysteine desulphurase, SufS; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.905
ABK72488.1
Putative oxidoreductase; Identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.
    
  0.902
ABK72744.1
Methyltransferase; Identified by match to protein family HMM PF03848; match to protein family HMM PF05724; match to protein family HMM PF07992.
  
 
 0.759
ABK75427.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00462; match to protein family HMM TIGR02200.
  
  
 0.756
ABK71010.1
ABC transporter ATP-binding protein, possibly in EF-3 subfamily protein; Identified by match to protein family HMM PF00005.
 
 
 
 0.750
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (26%) [HD]