Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70980.1 | ABK71597.1 | MSMEG_3244 | MSMEG_2148 | Hypothetical protein; Identified by Glimmer2; putative. | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | 0.775 |
ABK70980.1 | ABK71999.1 | MSMEG_3244 | MSMEG_3246 | Hypothetical protein; Identified by Glimmer2; putative. | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | 0.406 |
ABK70980.1 | ABK72493.1 | MSMEG_3244 | MSMEG_4083 | Hypothetical protein; Identified by Glimmer2; putative. | Putative monooxygenase. | 0.822 |
ABK70980.1 | ABK73799.1 | MSMEG_3244 | MSMEG_2746 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical alanine and leucine rich protein; Identified by match to protein family HMM PF01908. | 0.816 |
ABK70980.1 | aroB | MSMEG_3244 | MSMEG_3033 | Hypothetical protein; Identified by Glimmer2; putative. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.817 |
ABK70980.1 | metN-2 | MSMEG_3244 | MSMEG_5807 | Hypothetical protein; Identified by Glimmer2; putative. | D-methionine transport ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.762 |
ABK71597.1 | ABK70980.1 | MSMEG_2148 | MSMEG_3244 | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | Hypothetical protein; Identified by Glimmer2; putative. | 0.775 |
ABK71597.1 | ABK72493.1 | MSMEG_2148 | MSMEG_4083 | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | Putative monooxygenase. | 0.773 |
ABK71597.1 | ABK73799.1 | MSMEG_2148 | MSMEG_2746 | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | Conserved hypothetical alanine and leucine rich protein; Identified by match to protein family HMM PF01908. | 0.517 |
ABK71597.1 | aroB | MSMEG_2148 | MSMEG_3033 | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.607 |
ABK71597.1 | metN-2 | MSMEG_2148 | MSMEG_5807 | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | D-methionine transport ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.407 |
ABK71999.1 | ABK70980.1 | MSMEG_3246 | MSMEG_3244 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | Hypothetical protein; Identified by Glimmer2; putative. | 0.406 |
ABK72493.1 | ABK70980.1 | MSMEG_4083 | MSMEG_3244 | Putative monooxygenase. | Hypothetical protein; Identified by Glimmer2; putative. | 0.822 |
ABK72493.1 | ABK71597.1 | MSMEG_4083 | MSMEG_2148 | Putative monooxygenase. | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | 0.773 |
ABK72493.1 | ABK73799.1 | MSMEG_4083 | MSMEG_2746 | Putative monooxygenase. | Conserved hypothetical alanine and leucine rich protein; Identified by match to protein family HMM PF01908. | 0.826 |
ABK72493.1 | aroB | MSMEG_4083 | MSMEG_3033 | Putative monooxygenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.820 |
ABK72493.1 | metN-2 | MSMEG_4083 | MSMEG_5807 | Putative monooxygenase. | D-methionine transport ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. | 0.771 |
ABK73799.1 | ABK70980.1 | MSMEG_2746 | MSMEG_3244 | Conserved hypothetical alanine and leucine rich protein; Identified by match to protein family HMM PF01908. | Hypothetical protein; Identified by Glimmer2; putative. | 0.816 |
ABK73799.1 | ABK71597.1 | MSMEG_2746 | MSMEG_2148 | Conserved hypothetical alanine and leucine rich protein; Identified by match to protein family HMM PF01908. | HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. | 0.517 |
ABK73799.1 | ABK72493.1 | MSMEG_2746 | MSMEG_4083 | Conserved hypothetical alanine and leucine rich protein; Identified by match to protein family HMM PF01908. | Putative monooxygenase. | 0.826 |
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