Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70703.1 | ABK71999.1 | MSMEG_1918 | MSMEG_3246 | Sensor histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07568. | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | 0.937 |
| ABK71999.1 | ABK70703.1 | MSMEG_3246 | MSMEG_1918 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | Sensor histidine kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07568. | 0.937 |
| ABK71999.1 | ABK72013.1 | MSMEG_3246 | MSMEG_6880 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094. | 0.585 |
| ABK71999.1 | ABK72171.1 | MSMEG_3246 | MSMEG_2915 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. | 0.537 |
| ABK71999.1 | ABK72371.1 | MSMEG_3246 | MSMEG_4989 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. | 0.471 |
| ABK71999.1 | ABK72747.1 | MSMEG_3246 | MSMEG_3247 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | Branched-chain amino acid ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01094. | 0.708 |
| ABK71999.1 | ABK73676.1 | MSMEG_3246 | MSMEG_4321 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | Conserved hypothetical protein. | 0.599 |
| ABK71999.1 | atpC | MSMEG_3246 | MSMEG_4935 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.529 |
| ABK71999.1 | atpD | MSMEG_3246 | MSMEG_4936 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.605 |
| ABK71999.1 | rpsA | MSMEG_3246 | MSMEG_3833 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | 30S ribosomal protein S1; Binds mRNA, facilitating recognition of most mRNAs by the 30S ribosomal subunit during translation initiation (By similarity). Plays a role in trans-translation; binds tmRNA (the product of the ssrA gene). Binds very poorly to pyrazinoic acid (POA), the active form of the prodrug pyrazinamide (PZA); POA does not disrupt trans-translation in this organism. M.smegmatis is resistant to the antibiotic PZA. In trans-translation Ala-aminoacylated transfer-messenger RNA (tmRNA, product of the ssrA gene; the 2 termini fold to resemble tRNA(Ala) while it encodes a shor [...] | 0.765 |
| ABK71999.1 | trpC | MSMEG_3246 | MSMEG_3219 | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | Indole-3-glycerol phosphate synthase; Identified by match to protein family HMM PF00218; Belongs to the TrpC family. | 0.486 |
| ABK72013.1 | ABK71999.1 | MSMEG_6880 | MSMEG_3246 | Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094. | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | 0.585 |
| ABK72013.1 | ABK72747.1 | MSMEG_6880 | MSMEG_3247 | Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094. | Branched-chain amino acid ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01094. | 0.969 |
| ABK72171.1 | ABK71999.1 | MSMEG_2915 | MSMEG_3246 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | 0.537 |
| ABK72171.1 | rpsA | MSMEG_2915 | MSMEG_3833 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. | 30S ribosomal protein S1; Binds mRNA, facilitating recognition of most mRNAs by the 30S ribosomal subunit during translation initiation (By similarity). Plays a role in trans-translation; binds tmRNA (the product of the ssrA gene). Binds very poorly to pyrazinoic acid (POA), the active form of the prodrug pyrazinamide (PZA); POA does not disrupt trans-translation in this organism. M.smegmatis is resistant to the antibiotic PZA. In trans-translation Ala-aminoacylated transfer-messenger RNA (tmRNA, product of the ssrA gene; the 2 termini fold to resemble tRNA(Ala) while it encodes a shor [...] | 0.496 |
| ABK72371.1 | ABK71999.1 | MSMEG_4989 | MSMEG_3246 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | 0.471 |
| ABK72371.1 | rpsA | MSMEG_4989 | MSMEG_3833 | Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. | 30S ribosomal protein S1; Binds mRNA, facilitating recognition of most mRNAs by the 30S ribosomal subunit during translation initiation (By similarity). Plays a role in trans-translation; binds tmRNA (the product of the ssrA gene). Binds very poorly to pyrazinoic acid (POA), the active form of the prodrug pyrazinamide (PZA); POA does not disrupt trans-translation in this organism. M.smegmatis is resistant to the antibiotic PZA. In trans-translation Ala-aminoacylated transfer-messenger RNA (tmRNA, product of the ssrA gene; the 2 termini fold to resemble tRNA(Ala) while it encodes a shor [...] | 0.431 |
| ABK72747.1 | ABK71999.1 | MSMEG_3247 | MSMEG_3246 | Branched-chain amino acid ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01094. | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | 0.708 |
| ABK72747.1 | ABK72013.1 | MSMEG_3247 | MSMEG_6880 | Branched-chain amino acid ABC transporter substrate-binding protein; Identified by match to protein family HMM PF01094. | Hydrophobic amino acid ABC transporter, putative; Identified by match to protein family HMM PF01094. | 0.969 |
| ABK73676.1 | ABK71999.1 | MSMEG_4321 | MSMEG_3246 | Conserved hypothetical protein. | Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF03861. | 0.599 |
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