Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69932.1 | ABK70834.1 | MSMEG_6273 | MSMEG_3275 | Integral membrane protein. | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | 0.460 |
| ABK70834.1 | ABK69932.1 | MSMEG_3275 | MSMEG_6273 | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | Integral membrane protein. | 0.460 |
| ABK70834.1 | ABK72765.1 | MSMEG_3275 | MSMEG_2451 | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | HAD-superfamily protein hydrolase, subfamily protein IIA; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; Belongs to the HAD-like hydrolase superfamily. | 0.440 |
| ABK70834.1 | ABK74333.1 | MSMEG_3275 | MSMEG_4136 | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | dTDP-glucose 4,6-dehydratase. | 0.459 |
| ABK70834.1 | ABK74419.1 | MSMEG_3275 | MSMEG_1487 | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | Conserved hypothetical protein. | 0.502 |
| ABK70834.1 | ABK74737.1 | MSMEG_3275 | MSMEG_1755 | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | Anti-sigm factor, ChrR. | 0.426 |
| ABK70834.1 | ABK75875.1 | MSMEG_3275 | MSMEG_3276 | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | Integral membrane protein; Identified by match to protein family HMM PF00892. | 0.418 |
| ABK70834.1 | rpoB | MSMEG_3275 | MSMEG_1367 | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. This subunit often mutates to generate rifampicin (Rif) resistance. Interaction with RbpA partially restores Rif-inhibited transcription; once the subunit is Rif-resistant however RbpA no longer stimulates transcription. | 0.410 |
| ABK70834.1 | rpoC | MSMEG_3275 | MSMEG_1368 | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.415 |
| ABK70834.1 | rseA | MSMEG_3275 | MSMEG_5071 | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | Conserved hypothetical protein; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor SigE. ECF sigma factors are held in an inactive form by an anti-sigma factor (By similarity); Belongs to the zinc-associated anti-sigma factor (ZAS) superfamily. | 0.491 |
| ABK70834.1 | rshA | MSMEG_3275 | MSMEG_1915 | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | Anti-sigma factor, family protein; A redox-regulated anti-sigma factor for cognate extracytoplasmic function (ECF) sigma factor SigH. ECF sigma factors are held in an inactive form by an anti-sigma factor (Probable). Overexpression leads to increased susceptibility to diamide. | 0.493 |
| ABK72765.1 | ABK70834.1 | MSMEG_2451 | MSMEG_3275 | HAD-superfamily protein hydrolase, subfamily protein IIA; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460; Belongs to the HAD-like hydrolase superfamily. | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | 0.440 |
| ABK74333.1 | ABK70834.1 | MSMEG_4136 | MSMEG_3275 | dTDP-glucose 4,6-dehydratase. | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | 0.459 |
| ABK74419.1 | ABK70834.1 | MSMEG_1487 | MSMEG_3275 | Conserved hypothetical protein. | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | 0.502 |
| ABK74419.1 | rshA | MSMEG_1487 | MSMEG_1915 | Conserved hypothetical protein. | Anti-sigma factor, family protein; A redox-regulated anti-sigma factor for cognate extracytoplasmic function (ECF) sigma factor SigH. ECF sigma factors are held in an inactive form by an anti-sigma factor (Probable). Overexpression leads to increased susceptibility to diamide. | 0.410 |
| ABK74737.1 | ABK70834.1 | MSMEG_1755 | MSMEG_3275 | Anti-sigm factor, ChrR. | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | 0.426 |
| ABK75875.1 | ABK70834.1 | MSMEG_3276 | MSMEG_3275 | Integral membrane protein; Identified by match to protein family HMM PF00892. | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | 0.418 |
| rpoB | ABK70834.1 | MSMEG_1367 | MSMEG_3275 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. This subunit often mutates to generate rifampicin (Rif) resistance. Interaction with RbpA partially restores Rif-inhibited transcription; once the subunit is Rif-resistant however RbpA no longer stimulates transcription. | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | 0.410 |
| rpoB | rpoC | MSMEG_1367 | MSMEG_1368 | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. This subunit often mutates to generate rifampicin (Rif) resistance. Interaction with RbpA partially restores Rif-inhibited transcription; once the subunit is Rif-resistant however RbpA no longer stimulates transcription. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoC | ABK70834.1 | MSMEG_1368 | MSMEG_3275 | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | 0.415 |
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