STRINGSTRING
ABK72624.1 ABK72624.1 ABK71671.1 ABK71671.1 ABK76039.1 ABK76039.1 ABK72446.1 ABK72446.1 ABK70786.1 ABK70786.1 ABK74189.1 ABK74189.1 lexA lexA ABK75376.1 ABK75376.1 ABK75267.1 ABK75267.1 ABK76117.1 ABK76117.1 ABK73938.1 ABK73938.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72624.1Isonitrile hydratase, putative; Identified by match to protein family HMM PF01965. (231 aa)    
Predicted Functional Partners:
ABK71671.1
Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
   
0.765
ABK76039.1
Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
    0.710
ABK72446.1
AraC-family protein transcriptional regulator; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965.
 
    0.680
ABK70786.1
Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106.
  
    0.670
ABK74189.1
Regulatory protein, TetR; Identified by match to protein family HMM PF00440.
 
    0.584
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
 
 0.500
ABK75376.1
Identified by match to protein family HMM PF01810.
  
    0.492
ABK75267.1
Transcriptional regulator, AraC family protein; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
 
 
 0.473
ABK76117.1
Probable transcriptional regulator, AraC family protein, putative; Identified by match to protein family HMM PF00165.
 
 
 0.437
ABK73938.1
Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.
 
    0.432
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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