STRINGSTRING
ABK73996.1 ABK73996.1 ABK73649.1 ABK73649.1 ABK72579.1 ABK72579.1 ABK72226.1 ABK72226.1 ABK75122.1 ABK75122.1 ABK71203.1 ABK71203.1 ABK70807.1 ABK70807.1 ABK75176.1 ABK75176.1 ABK72253.1 ABK72253.1 narH narH narJ narJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK73996.1Shikimate transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (446 aa)    
Predicted Functional Partners:
ABK73649.1
Aldehyde dehydrogenase (NAD) family protein; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
  
 0.790
ABK72579.1
Isoflavone reductase; Identified by match to protein family HMM PF05368.
  
    0.780
ABK72226.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.779
ABK75122.1
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; Identified by match to protein family HMM PF00107.
  
    0.777
ABK71203.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.561
ABK70807.1
Putative acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.
  
  
 0.542
ABK75176.1
Nitrate reductase, alpha subunit; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.515
ABK72253.1
enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.503
narH
Nitrate reductase, beta subunit; Identified by match to protein family HMM TIGR01660.
  
  
 0.501
narJ
Nitrate reductase molybdenum cofactor assembly chaperone; Identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684.
  
  
 0.496
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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