ABK73193.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK73193.1

Cupin domain protein; Identified by match to protein family HMM PF07883. (139 aa)

Predicted Functional Partners:

ABK74016.1

0.875

ABK76004.1

0.802

ABK73334.1

0.791

ABK73598.1

0.754

ABK73818.1

0.693

nthA

0.659

ABK72253.1

0.610

ABK72996.1

0.587

ABK70807.1

0.582

ABK74157.1

0.511

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70807.1	ABK72253.1	MSMEG_3389	MSMEG_3390	Putative acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.850
ABK70807.1	ABK73193.1	MSMEG_3389	MSMEG_3394	Putative acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	Cupin domain protein; Identified by match to protein family HMM PF07883.	0.582
ABK70807.1	ABK73334.1	MSMEG_3389	MSMEG_3393	Putative acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441.	0.762
ABK70807.1	ABK73598.1	MSMEG_3389	MSMEG_3391	Putative acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.695
ABK70807.1	ABK74016.1	MSMEG_3389	MSMEG_3395	Putative acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	Short chain dehydrogenase; Identified by match to protein family HMM PF00106.	0.690
ABK70807.1	ABK76004.1	MSMEG_3389	MSMEG_3392	Putative acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	0.766
ABK72253.1	ABK70807.1	MSMEG_3390	MSMEG_3389	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Putative acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	0.850
ABK72253.1	ABK73193.1	MSMEG_3390	MSMEG_3394	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Cupin domain protein; Identified by match to protein family HMM PF07883.	0.610
ABK72253.1	ABK73334.1	MSMEG_3390	MSMEG_3393	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441.	0.869
ABK72253.1	ABK73598.1	MSMEG_3390	MSMEG_3391	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.640
ABK72253.1	ABK74016.1	MSMEG_3390	MSMEG_3395	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	Short chain dehydrogenase; Identified by match to protein family HMM PF00106.	0.678
ABK72253.1	ABK76004.1	MSMEG_3390	MSMEG_3392	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	0.858
ABK72996.1	ABK73193.1	MSMEG_6267	MSMEG_3394	Thiocyanate hydrolase gamma subunit; Identified by match to protein family HMM PF02979.	Cupin domain protein; Identified by match to protein family HMM PF07883.	0.587
ABK73193.1	ABK70807.1	MSMEG_3394	MSMEG_3389	Cupin domain protein; Identified by match to protein family HMM PF07883.	Putative acetolactate synthase; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	0.582
ABK73193.1	ABK72253.1	MSMEG_3394	MSMEG_3390	Cupin domain protein; Identified by match to protein family HMM PF07883.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.610
ABK73193.1	ABK72996.1	MSMEG_3394	MSMEG_6267	Cupin domain protein; Identified by match to protein family HMM PF07883.	Thiocyanate hydrolase gamma subunit; Identified by match to protein family HMM PF02979.	0.587
ABK73193.1	ABK73334.1	MSMEG_3394	MSMEG_3393	Cupin domain protein; Identified by match to protein family HMM PF07883.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441.	0.791
ABK73193.1	ABK73598.1	MSMEG_3394	MSMEG_3391	Cupin domain protein; Identified by match to protein family HMM PF07883.	L-carnitine dehydratase/bile acid-inducible protein F; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.754
ABK73193.1	ABK73818.1	MSMEG_3394	MSMEG_4589	Cupin domain protein; Identified by match to protein family HMM PF07883.	Rhodanese domain protein/cystathionine beta-lyase.	0.693
ABK73193.1	ABK74016.1	MSMEG_3394	MSMEG_3395	Cupin domain protein; Identified by match to protein family HMM PF07883.	Short chain dehydrogenase; Identified by match to protein family HMM PF00106.	0.875