ABK72953.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK72953.1

Conserved hypothetical protein. (371 aa)

Predicted Functional Partners:

ABK75293.1

0.936

ABK71664.1

0.679

ABK73568.1

0.637

ABK73786.1

0.592

ABK73018.1

0.558

ABK73469.1

0.529

ABK73528.1

0.522

ABK69789.1

0.522

ABK72916.1

0.519

ABK71447.1

0.446

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69789.1	ABK71447.1	MSMEG_1548	MSMEG_5576	Propanediol utilization: dehydratase, medium subunit; Identified by match to protein family HMM PF02288.	D-mannonate oxidoreductase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	0.817
ABK69789.1	ABK72916.1	MSMEG_1548	MSMEG_2080	Propanediol utilization: dehydratase, medium subunit; Identified by match to protein family HMM PF02288.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.	0.818
ABK69789.1	ABK72953.1	MSMEG_1548	MSMEG_3414	Propanediol utilization: dehydratase, medium subunit; Identified by match to protein family HMM PF02288.	Conserved hypothetical protein.	0.522
ABK69789.1	ABK73469.1	MSMEG_1548	MSMEG_4005	Propanediol utilization: dehydratase, medium subunit; Identified by match to protein family HMM PF02288.	Calcium-binding protein.	0.817
ABK69789.1	ABK73528.1	MSMEG_1548	MSMEG_0881	Propanediol utilization: dehydratase, medium subunit; Identified by match to protein family HMM PF02288.	Conserved hypothetical protein.	0.817
ABK69789.1	ABK73786.1	MSMEG_1548	MSMEG_4714	Propanediol utilization: dehydratase, medium subunit; Identified by match to protein family HMM PF02288.	MoaC domain protein; Identified by match to protein family HMM PF01575.	0.605
ABK69789.1	ABK75293.1	MSMEG_1548	MSMEG_3415	Propanediol utilization: dehydratase, medium subunit; Identified by match to protein family HMM PF02288.	Identified by match to protein family HMM PF01047; match to protein family HMM PF01978.	0.529
ABK71447.1	ABK69789.1	MSMEG_5576	MSMEG_1548	D-mannonate oxidoreductase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Propanediol utilization: dehydratase, medium subunit; Identified by match to protein family HMM PF02288.	0.817
ABK71447.1	ABK72916.1	MSMEG_5576	MSMEG_2080	D-mannonate oxidoreductase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.	0.817
ABK71447.1	ABK72953.1	MSMEG_5576	MSMEG_3414	D-mannonate oxidoreductase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Conserved hypothetical protein.	0.446
ABK71447.1	ABK73469.1	MSMEG_5576	MSMEG_4005	D-mannonate oxidoreductase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Calcium-binding protein.	0.872
ABK71447.1	ABK73528.1	MSMEG_5576	MSMEG_0881	D-mannonate oxidoreductase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Conserved hypothetical protein.	0.817
ABK71447.1	ABK73786.1	MSMEG_5576	MSMEG_4714	D-mannonate oxidoreductase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	MoaC domain protein; Identified by match to protein family HMM PF01575.	0.519
ABK71447.1	ABK75293.1	MSMEG_5576	MSMEG_3415	D-mannonate oxidoreductase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	Identified by match to protein family HMM PF01047; match to protein family HMM PF01978.	0.441
ABK71664.1	ABK72916.1	MSMEG_4920	MSMEG_2080	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.	0.834
ABK71664.1	ABK72953.1	MSMEG_4920	MSMEG_3414	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930.	Conserved hypothetical protein.	0.679
ABK71664.1	ABK73786.1	MSMEG_4920	MSMEG_4714	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930.	MoaC domain protein; Identified by match to protein family HMM PF01575.	0.601
ABK71664.1	ABK75293.1	MSMEG_4920	MSMEG_3415	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930.	Identified by match to protein family HMM PF01047; match to protein family HMM PF01978.	0.687
ABK72916.1	ABK69789.1	MSMEG_2080	MSMEG_1548	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.	Propanediol utilization: dehydratase, medium subunit; Identified by match to protein family HMM PF02288.	0.818
ABK72916.1	ABK71447.1	MSMEG_2080	MSMEG_5576	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.	D-mannonate oxidoreductase; Identified by match to protein family HMM PF01232; match to protein family HMM PF08125.	0.817