STRINGSTRING
ABK75293.1 ABK75293.1 ABK72953.1 ABK72953.1 ABK71664.1 ABK71664.1 ABK73786.1 ABK73786.1 ureD ureD rplY rplY ABK73769.1 ABK73769.1 ABK72916.1 ABK72916.1 ABK69789.1 ABK69789.1 ABK73469.1 ABK73469.1 ABK73528.1 ABK73528.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75293.1Identified by match to protein family HMM PF01047; match to protein family HMM PF01978. (161 aa)    
Predicted Functional Partners:
ABK72953.1
Conserved hypothetical protein.
 
  
 0.936
ABK71664.1
acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930.
  
  
 0.687
ABK73786.1
MoaC domain protein; Identified by match to protein family HMM PF01575.
  
  
 0.604
ureD
Urease accessory protein UreD, putative; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
  
 0.570
rplY
Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
  
 0.555
ABK73769.1
Protein of unknown function DUF6, transmembrane, putative; Identified by match to protein family HMM PF00892.
  
  
 0.551
ABK72916.1
Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028.
  
  
 0.533
ABK69789.1
Propanediol utilization: dehydratase, medium subunit; Identified by match to protein family HMM PF02288.
   
  
 0.529
ABK73469.1
Calcium-binding protein.
   
  
 0.525
ABK73528.1
Conserved hypothetical protein.
   
  
 0.523
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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