ABK69819.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK69819.1

Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730. (393 aa)

Predicted Functional Partners:

ABK74516.1

0.900

ABK73232.1

0.899

ABK75395.1

0.899

ABK73294.1

0.899

ABK70063.1

0.899

ABK75050.1

0.898

ABK70761.1

0.898

ABK72342.1

0.896

ABK70647.1

0.896

ABK74226.1

0.896

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69819.1	ABK70063.1	MSMEG_3448	MSMEG_4969	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	0.899
ABK69819.1	ABK70647.1	MSMEG_3448	MSMEG_0856	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.896
ABK69819.1	ABK70761.1	MSMEG_3448	MSMEG_0983	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.898
ABK69819.1	ABK72342.1	MSMEG_3448	MSMEG_0473	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	Transcriptional regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.896
ABK69819.1	ABK73232.1	MSMEG_3448	MSMEG_2807	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	Two-component system response regulator; Identified by match to protein family HMM PF00196.	0.899
ABK69819.1	ABK73294.1	MSMEG_3448	MSMEG_4378	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.899
ABK69819.1	ABK74226.1	MSMEG_3448	MSMEG_5987	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	Two-component regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.896
ABK69819.1	ABK74516.1	MSMEG_3448	MSMEG_3447	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.900
ABK69819.1	ABK75050.1	MSMEG_3448	MSMEG_0459	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.898
ABK69819.1	ABK75395.1	MSMEG_3448	MSMEG_3942	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	Conserved hypothetical protein.	0.899
ABK70063.1	ABK69819.1	MSMEG_4969	MSMEG_3448	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	0.899
ABK70063.1	ABK70647.1	MSMEG_4969	MSMEG_0856	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.414
ABK70063.1	ABK72342.1	MSMEG_4969	MSMEG_0473	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	Transcriptional regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.773
ABK70063.1	ABK74226.1	MSMEG_4969	MSMEG_5987	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	Two-component regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	0.774
ABK70063.1	ABK75395.1	MSMEG_4969	MSMEG_3942	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	Conserved hypothetical protein.	0.428
ABK70647.1	ABK69819.1	MSMEG_0856	MSMEG_3448	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	0.896
ABK70647.1	ABK70063.1	MSMEG_0856	MSMEG_4969	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.	0.414
ABK70647.1	ABK75395.1	MSMEG_0856	MSMEG_3942	DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	Conserved hypothetical protein.	0.435
ABK70761.1	ABK69819.1	MSMEG_0983	MSMEG_3448	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.	0.898
ABK70761.1	ABK75395.1	MSMEG_0983	MSMEG_3942	Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.	Conserved hypothetical protein.	0.432

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About