ABK75762.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK75762.1

Oxidoreductase; Identified by match to protein family HMM PF00881. (221 aa)

Predicted Functional Partners:

ABK70296.1

0.513

ABK72515.1

0.490

katG

0.488

ABK73980.1

0.480

ABK70812.1

0.474

ABK74841.1

0.466

ABK74109.1

0.462

ABK71153.1

0.431

ABK73556.1

0.429

ABK70509.1

0.426

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70296.1	ABK75762.1	MSMEG_4776	MSMEG_3462	Glyoxalase/bleomycin resistance protein/dioxygenase.	Oxidoreductase; Identified by match to protein family HMM PF00881.	0.513
ABK70509.1	ABK74109.1	MSMEG_3118	MSMEG_1642	ABC transporter efflux protein, DrrB family protein; Identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061.	0.460
ABK70509.1	ABK75762.1	MSMEG_3118	MSMEG_3462	ABC transporter efflux protein, DrrB family protein; Identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025.	Oxidoreductase; Identified by match to protein family HMM PF00881.	0.426
ABK70812.1	ABK75762.1	MSMEG_3357	MSMEG_3462	Metal-dependent phosphohydrolase, HD subdomain.	Oxidoreductase; Identified by match to protein family HMM PF00881.	0.474
ABK71153.1	ABK74109.1	MSMEG_6510	MSMEG_1642	ABC-type drug export system, membrane protein; Identified by match to protein family HMM PF01061.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061.	0.455
ABK71153.1	ABK75762.1	MSMEG_6510	MSMEG_3462	ABC-type drug export system, membrane protein; Identified by match to protein family HMM PF01061.	Oxidoreductase; Identified by match to protein family HMM PF00881.	0.431
ABK72515.1	ABK75762.1	MSMEG_0608	MSMEG_3462	Identified by match to protein family HMM PF00903.	Oxidoreductase; Identified by match to protein family HMM PF00881.	0.490
ABK73556.1	ABK74109.1	MSMEG_6765	MSMEG_1642	ABC-2 type transporter superfamily protein; Identified by match to protein family HMM PF01061.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061.	0.457
ABK73556.1	ABK75762.1	MSMEG_6765	MSMEG_3462	ABC-2 type transporter superfamily protein; Identified by match to protein family HMM PF01061.	Oxidoreductase; Identified by match to protein family HMM PF00881.	0.429
ABK73980.1	ABK75762.1	MSMEG_1174	MSMEG_3462	Cadmium inducible protein cadi; Identified by match to protein family HMM PF00903.	Oxidoreductase; Identified by match to protein family HMM PF00881.	0.480
ABK74109.1	ABK70509.1	MSMEG_1642	MSMEG_3118	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061.	ABC transporter efflux protein, DrrB family protein; Identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025.	0.460
ABK74109.1	ABK71153.1	MSMEG_1642	MSMEG_6510	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061.	ABC-type drug export system, membrane protein; Identified by match to protein family HMM PF01061.	0.455
ABK74109.1	ABK73556.1	MSMEG_1642	MSMEG_6765	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061.	ABC-2 type transporter superfamily protein; Identified by match to protein family HMM PF01061.	0.457
ABK74109.1	ABK75762.1	MSMEG_1642	MSMEG_3462	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00498; match to protein family HMM PF01061.	Oxidoreductase; Identified by match to protein family HMM PF00881.	0.462
ABK74841.1	ABK75762.1	MSMEG_3460	MSMEG_3462	Ferric uptake regulation protein; Identified by match to protein family HMM PF01475; Belongs to the Fur family.	Oxidoreductase; Identified by match to protein family HMM PF00881.	0.466
ABK74841.1	katG	MSMEG_3460	MSMEG_3461	Ferric uptake regulation protein; Identified by match to protein family HMM PF01475; Belongs to the Fur family.	Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity. May play a role in the intracellular survival of mycobacteria.	0.877
ABK75762.1	ABK70296.1	MSMEG_3462	MSMEG_4776	Oxidoreductase; Identified by match to protein family HMM PF00881.	Glyoxalase/bleomycin resistance protein/dioxygenase.	0.513
ABK75762.1	ABK70509.1	MSMEG_3462	MSMEG_3118	Oxidoreductase; Identified by match to protein family HMM PF00881.	ABC transporter efflux protein, DrrB family protein; Identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025.	0.426
ABK75762.1	ABK70812.1	MSMEG_3462	MSMEG_3357	Oxidoreductase; Identified by match to protein family HMM PF00881.	Metal-dependent phosphohydrolase, HD subdomain.	0.474
ABK75762.1	ABK71153.1	MSMEG_3462	MSMEG_6510	Oxidoreductase; Identified by match to protein family HMM PF00881.	ABC-type drug export system, membrane protein; Identified by match to protein family HMM PF01061.	0.431