STRINGSTRING
ABK70773.1 ABK70773.1 ABK70272.1 ABK70272.1 ABK71347.1 ABK71347.1 ecf ecf ABK74350.1 ABK74350.1 ABK70338.1 ABK70338.1 ABK70302.1 ABK70302.1 ABK71842.1 ABK71842.1 ABK71068.1 ABK71068.1 cadA cadA ABK70091.1 ABK70091.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK70773.1Transcriptional regulator, ArsR family protein. (246 aa)    
Predicted Functional Partners:
ABK70272.1
Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.
 
    0.564
ABK71347.1
Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022.
 
  
 0.467
ecf
Extra cytoplasmic sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
 
    0.461
ABK74350.1
Transcriptional regulator, ArsR family protein; Identified by match to protein family HMM PF01022.
 
  
 0.446
ABK70338.1
RNA polymerase ECF-subfamily protein sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
 
     0.436
ABK70302.1
Methyltransferase type 12; Identified by match to protein family HMM PF05724.
 
  
 0.420
ABK71842.1
Conserved hypothetical protein.
  
    0.420
ABK71068.1
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.416
cadA
Cadmium-translocating P-type ATPase; Involved in heavy metal homeostasis. Probably exports nickel and cobalt ions out of the cell; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.
  
  
 0.403
ABK70091.1
Cadmium transporting P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.
  
  
 0.403
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (24%) [HD]