Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70370.1 | ABK75645.1 | MSMEG_5458 | MSMEG_3513 | Cyclic nucleotide-binding protein; Catalyzes specifically the acetylation of the epsilon-amino group of a highly conserved lysine residue in acetyl-CoA synthetase (ACS) and of the universal stress protein (USP) MSMEG_4207. Acetylation results in the inactivation of ACS activity and could be important for mycobacteria to adjust to environmental changes. | Enhanced intracellular survival protein. | 0.606 |
| ABK71205.1 | ABK72840.1 | MSMEG_3751 | MSMEG_6389 | Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478. | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | 0.766 |
| ABK71205.1 | ABK75645.1 | MSMEG_3751 | MSMEG_3513 | Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478. | Enhanced intracellular survival protein. | 0.540 |
| ABK71205.1 | ABK76102.1 | MSMEG_3751 | MSMEG_6506 | Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478. | Nicotinamidase/pyrazinamidase; Identified by match to protein family HMM PF00857. | 0.789 |
| ABK71205.1 | whiB7 | MSMEG_3751 | MSMEG_1953 | Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (By similarity). Participates in maintaining a reduced cytoplasmic (MSH/MSSM) environment under normal growth conditions and directly or indirectly controls the concentration of mycothiol (MSH + MSSM). | 0.779 |
| ABK71666.1 | ABK75645.1 | MSMEG_3514 | MSMEG_3513 | Hypothetical protein; Identified by Glimmer2; putative. | Enhanced intracellular survival protein. | 0.632 |
| ABK71666.1 | cinA | MSMEG_3514 | MSMEG_3512 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family. | 0.547 |
| ABK72840.1 | ABK71205.1 | MSMEG_6389 | MSMEG_3751 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478. | 0.766 |
| ABK72840.1 | ABK75645.1 | MSMEG_6389 | MSMEG_3513 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Enhanced intracellular survival protein. | 0.551 |
| ABK72840.1 | ABK76102.1 | MSMEG_6389 | MSMEG_6506 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Nicotinamidase/pyrazinamidase; Identified by match to protein family HMM PF00857. | 0.783 |
| ABK72840.1 | whiB7 | MSMEG_6389 | MSMEG_1953 | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (By similarity). Participates in maintaining a reduced cytoplasmic (MSH/MSSM) environment under normal growth conditions and directly or indirectly controls the concentration of mycothiol (MSH + MSSM). | 0.469 |
| ABK73802.1 | ABK73962.1 | MSMEG_1646 | MSMEG_4574 | Ribosomal RNA adenine dimethylase family protein; Identified by match to protein family HMM PF00398; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. | Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | 0.609 |
| ABK73802.1 | ABK75645.1 | MSMEG_1646 | MSMEG_3513 | Ribosomal RNA adenine dimethylase family protein; Identified by match to protein family HMM PF00398; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. | Enhanced intracellular survival protein. | 0.631 |
| ABK73962.1 | ABK73802.1 | MSMEG_4574 | MSMEG_1646 | Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | Ribosomal RNA adenine dimethylase family protein; Identified by match to protein family HMM PF00398; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. | 0.609 |
| ABK73962.1 | ABK75645.1 | MSMEG_4574 | MSMEG_3513 | Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | Enhanced intracellular survival protein. | 0.612 |
| ABK73962.1 | cinA | MSMEG_4574 | MSMEG_3512 | Identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426. | Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family. | 0.513 |
| ABK75645.1 | ABK70370.1 | MSMEG_3513 | MSMEG_5458 | Enhanced intracellular survival protein. | Cyclic nucleotide-binding protein; Catalyzes specifically the acetylation of the epsilon-amino group of a highly conserved lysine residue in acetyl-CoA synthetase (ACS) and of the universal stress protein (USP) MSMEG_4207. Acetylation results in the inactivation of ACS activity and could be important for mycobacteria to adjust to environmental changes. | 0.606 |
| ABK75645.1 | ABK71205.1 | MSMEG_3513 | MSMEG_3751 | Enhanced intracellular survival protein. | Identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478. | 0.540 |
| ABK75645.1 | ABK71666.1 | MSMEG_3513 | MSMEG_3514 | Enhanced intracellular survival protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.632 |
| ABK75645.1 | ABK72840.1 | MSMEG_3513 | MSMEG_6389 | Enhanced intracellular survival protein. | Probable arabinosyltransferase A; Identified by match to protein family HMM PF04602. | 0.551 |
page 1 of 2