STRINGSTRING
hydA hydA ABK75274.1 ABK75274.1 ABK74148.1 ABK74148.1 ABK75477.1 ABK75477.1 ABK73215.1 ABK73215.1 ABK75573.1 ABK75573.1 ABK71848.1 ABK71848.1 pyrB pyrB hydA-2 hydA-2 hydA-3 hydA-3 ABK74201.1 ABK74201.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hydADihydropyrimidinase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033. (470 aa)    
Predicted Functional Partners:
ABK75274.1
Hydrolase; Identified by match to protein family HMM PF00795.
 
 0.998
ABK74148.1
N-carbamoyl-L-amino acid amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.
 
 
 0.942
ABK75477.1
N-carbamoyl-L-amino acid amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.
 
 
 0.941
ABK73215.1
N-carbamoyl-L-amino acid amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.
 
 
 0.941
ABK75573.1
N-carbamoyl-L-amino acid hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879.
 
 
 0.936
ABK71848.1
N5,N10-methylene- tetrahydromethanopterin reductase; Identified by match to protein family HMM PF00296.
 
     0.914
pyrB
Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 
 0.911
hydA-2
Dihydropyrimidinase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.
  
 
 
0.903
hydA-3
Dihydropyrimidinase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02033.
  
 
 
0.903
ABK74201.1
Integral membrane transporter; Identified by match to protein family HMM PF02133.
 
  
 0.881
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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