Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69640.1 | ABK70755.1 | MSMEG_3915 | MSMEG_3605 | NAD-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107. | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | 0.469 |
| ABK69640.1 | ABK71543.1 | MSMEG_3915 | MSMEG_3603 | NAD-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107. | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | 0.483 |
| ABK69640.1 | ABK74292.1 | MSMEG_3915 | MSMEG_2564 | NAD-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107. | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | 0.534 |
| ABK70755.1 | ABK69640.1 | MSMEG_3605 | MSMEG_3915 | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | NAD-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107. | 0.469 |
| ABK70755.1 | ABK71543.1 | MSMEG_3605 | MSMEG_3603 | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | 0.751 |
| ABK70755.1 | ABK72360.1 | MSMEG_3605 | MSMEG_3601 | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | 0.722 |
| ABK70755.1 | ABK74292.1 | MSMEG_3605 | MSMEG_2564 | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | 0.492 |
| ABK70755.1 | ABK74742.1 | MSMEG_3605 | MSMEG_3604 | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | Sorbitol utilization protein SOU2; Identified by match to protein family HMM PF00106. | 0.758 |
| ABK70755.1 | ABK75137.1 | MSMEG_3605 | MSMEG_3606 | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | Transcriptional regulator; Identified by match to protein family HMM PF04198. | 0.629 |
| ABK70755.1 | ABK75370.1 | MSMEG_3605 | MSMEG_3602 | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | Ribose transport ATP-binding protein RbsA; Identified by match to protein family HMM PF00005. | 0.725 |
| ABK70755.1 | dthD | MSMEG_3605 | MSMEG_3607 | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | Short chain dehydrogenase; Catalyzes the NAD-dependent reversible oxidation of D- threitol. Involved in the degradation pathway of D-threitol, that allows M.smegmatis to grow on this compound as the sole carbon source. Does not catalyze the oxidation of xylitol, L-sorbitol, and L-sorbose. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.597 |
| ABK70755.1 | thpA | MSMEG_3605 | MSMEG_3599 | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | Sugar-binding transcriptional regulator, LacI family protein; Part of an ABC transporter complex involved in D-threitol import. Binds D-threitol. Functions in the transport for the degradation pathway of D-threitol, that allows M.smegmatis to grow on this compound as the sole carbon source; Belongs to the bacterial solute-binding protein 2 family. | 0.620 |
| ABK70755.1 | xypA | MSMEG_3605 | MSMEG_3598 | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | Periplasmic sugar-binding proteins; Part of an ABC transporter complex likely involved in xylitol import. Binds xylitol. | 0.546 |
| ABK71543.1 | ABK69640.1 | MSMEG_3603 | MSMEG_3915 | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | NAD-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107. | 0.483 |
| ABK71543.1 | ABK70755.1 | MSMEG_3603 | MSMEG_3605 | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | Sorbitol dehydrogenase; Identified by match to protein family HMM PF00107. | 0.751 |
| ABK71543.1 | ABK72360.1 | MSMEG_3603 | MSMEG_3601 | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. | 0.802 |
| ABK71543.1 | ABK74292.1 | MSMEG_3603 | MSMEG_2564 | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | 0.572 |
| ABK71543.1 | ABK74742.1 | MSMEG_3603 | MSMEG_3604 | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | Sorbitol utilization protein SOU2; Identified by match to protein family HMM PF00106. | 0.797 |
| ABK71543.1 | ABK75137.1 | MSMEG_3603 | MSMEG_3606 | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | Transcriptional regulator; Identified by match to protein family HMM PF04198. | 0.503 |
| ABK71543.1 | ABK75370.1 | MSMEG_3603 | MSMEG_3602 | Oxidoreductase, zinc-binding dehydrogenase family protein; Identified by match to protein family HMM PF00107. | Ribose transport ATP-binding protein RbsA; Identified by match to protein family HMM PF00005. | 0.798 |
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