STRINGSTRING
ABK72481.1 ABK72481.1 ABK71702.1 ABK71702.1 ureC-2 ureC-2 ureA ureA ureG-2 ureG-2 ABK73901.1 ABK73901.1 ureB ureB ureD ureD ureG ureG ureC ureC ABK75683.1 ABK75683.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72481.1Urease accessory protein uref. (211 aa)    
Predicted Functional Partners:
ABK71702.1
Conserved hypothetical protein.
 
 
 0.995
ureC-2
Urease, alpha subunit; Identified by match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM TIGR01792; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
 
 
 0.984
ureA
Urease, gamma subunit; Identified by match to protein family HMM PF00547; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family.
 
 
 0.975
ureG-2
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 
 0.965
ABK73901.1
Urease gamma/beta subunit; Identified by match to protein family HMM PF00547; match to protein family HMM PF00699; match to protein family HMM TIGR00192; match to protein family HMM TIGR00193.
  
 
 0.960
ureB
Urease, beta subunit; Identified by match to protein family HMM PF00699; match to protein family HMM TIGR00192; Belongs to the urease beta subunit family.
 
 
 0.952
ureD
Urease accessory protein UreD, putative; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
 
 0.895
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 
 0.855
ureC
Urease, alpha subunit; Identified by match to protein family HMM PF00449; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01792.
 
 
 0.845
ABK75683.1
ComA operon protein 2; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369.
  
    0.786
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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