STRINGSTRING
ABK69668.1 ABK69668.1 ABK70364.1 ABK70364.1 ABK72784.1 ABK72784.1 ABK71055.1 ABK71055.1 gmk gmk ABK70886.1 ABK70886.1 ABK70355.1 ABK70355.1 rpsD rpsD hrpA hrpA rpsK rpsK ABK70095.1 ABK70095.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ABK69668.1Para-nitrobenzyl esterase; Identified by match to protein family HMM PF00135; Belongs to the type-B carboxylesterase/lipase family. (520 aa)    
Predicted Functional Partners:
ABK70364.1
1-acylglycerol-3-phosphate O-acyltransferase; Identified by match to protein family HMM PF01553.
   
  
 0.822
ABK72784.1
C-5 sterol desaturase.
  
  
 0.761
ABK71055.1
TrkA domain protein; Identified by match to protein family HMM PF02080.
 
    0.707
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 0.705
ABK70886.1
Leupeptin-inactivating enzyme 1; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.
  
 0.691
ABK70355.1
Hydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389.
  
 0.687
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
  0.680
hrpA
ATP-dependent helicase HrpA; Identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967.
    
 0.671
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
  0.667
ABK70095.1
Identified by match to protein family HMM PF00570; match to protein family HMM PF01612.
    
 0.653
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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