STRINGSTRING
ABK74794.1 ABK74794.1 ABK73220.1 ABK73220.1 eda-2 eda-2 ABK72097.1 ABK72097.1 aroK aroK ABK76135.1 ABK76135.1 ABK74137.1 ABK74137.1 ABK71405.1 ABK71405.1 ABK74028.1 ABK74028.1 ABK70924.1 ABK70924.1 ABK71870.1 ABK71870.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK74794.1Inner membrane permease YgbN; Identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791. (463 aa)    
Predicted Functional Partners:
ABK73220.1
D-amino acid deaminase.
  
    0.718
eda-2
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; Identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182.
  
  
 0.714
ABK72097.1
D-aminoacylase; Identified by match to protein family HMM PF07908; match to protein family HMM PF07969.
  
    0.694
aroK
Shikimate kinase; Identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313.
 
  
 0.587
ABK76135.1
PfkB-family protein carbohydrate kinase; Identified by match to protein family HMM PF00294.
  
  
 0.546
ABK74137.1
6-phosphogluconate dehydrogenase, decarboxylating; Identified by match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00872.
 
  
 0.542
ABK71405.1
Glycerate kinase; Identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; Belongs to the glycerate kinase type-1 family.
 
  
 0.535
ABK74028.1
Putative xylulose kinase; Identified by match to protein family HMM PF00370.
 
  
 0.495
ABK70924.1
Transcriptional regulator, IclR family protein; Identified by match to protein family HMM PF01614.
  
    0.493
ABK71870.1
Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.
  
    0.472
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (10%) [HD]