STRINGSTRING
ABK74106.1 ABK74106.1 ABK72456.1 ABK72456.1 ABK71933.1 ABK71933.1 rbfA rbfA ABK76198.1 ABK76198.1 ABK74925.1 ABK74925.1 mpa mpa infB infB ABK72621.1 ABK72621.1 ABK70882.1 ABK70882.1 ABK74356.1 ABK74356.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
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Experiments
Databases
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[Homology]
Score
ABK74106.1Conserved hypothetical protein; Identified by match to protein family HMM PF04456. (97 aa)    
Predicted Functional Partners:
ABK72456.1
Low molecular weight antigen MTB12.
  
    0.895
ABK71933.1
LppK protein.
  
    0.892
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.693
ABK76198.1
Conserved hypothetical protein.
  
    0.591
ABK74925.1
Multisubunit Na+/H+ antiporter, G subunit; Identified by match to protein family HMM PF03334; match to protein family HMM TIGR01300.
   
    0.582
mpa
ATPase, AAA family protein; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis.
  
    0.578
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
  
 0.552
ABK72621.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04296.
 
  
 0.498
ABK70882.1
SseC protein; Identified by match to protein family HMM PF07210.
  
    0.479
ABK74356.1
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.465
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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