STRINGSTRING
ABK70721.1 ABK70721.1 ABK70689.1 ABK70689.1 ABK75395.1 ABK75395.1 ABK71009.1 ABK71009.1 ribBA ribBA ABK72215.1 ABK72215.1 ABK75020.1 ABK75020.1 ABK71220.1 ABK71220.1 ABK69698.1 ABK69698.1 ABK70610.1 ABK70610.1 pcaB pcaB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK70721.1Conserved hypothetical protein. (320 aa)    
Predicted Functional Partners:
ABK70689.1
Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
    0.827
ABK75395.1
Conserved hypothetical protein.
 
  
 0.651
ABK71009.1
Conserved hypothetical protein.
  
    0.626
ribBA
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.622
ABK72215.1
Fumarate hydratase class I, anaerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.614
ABK75020.1
NADH-fmn oxidoreductase; Identified by match to protein family HMM PF01613.
  
  
 0.602
ABK71220.1
RsbW protein.
 
    0.593
ABK69698.1
Beta-ketoadipyl CoA thiolase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.589
ABK70610.1
GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.
 
    0.545
pcaB
3-carboxy-cis,cis-muconate cycloisomerase; Identified by match to protein family HMM PF00206; match to protein family HMM TIGR02426.
  
  
 0.544
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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