ABK73889.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK73889.1

Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (443 aa)

Predicted Functional Partners:

ABK73027.1

0.635

ABK75610.1

0.522

ABK73116.1

0.437

ABK74218.1

0.414

ABK72067.1

0.410

ABK71617.1

0.409

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK71617.1	ABK72067.1	MSMEG_2512	MSMEG_1424	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	FMN-dependent dehydrogenase; Identified by match to protein family HMM PF01070.	0.924
ABK71617.1	ABK73027.1	MSMEG_2512	MSMEG_3986	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	Acetyl-coenzyme A synthetase; Identified by match to protein family HMM PF00501.	0.913
ABK71617.1	ABK73889.1	MSMEG_2512	MSMEG_3985	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.409
ABK71617.1	ABK74218.1	MSMEG_2512	MSMEG_3962	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	0.903
ABK72067.1	ABK71617.1	MSMEG_1424	MSMEG_2512	FMN-dependent dehydrogenase; Identified by match to protein family HMM PF01070.	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	0.924
ABK72067.1	ABK73889.1	MSMEG_1424	MSMEG_3985	FMN-dependent dehydrogenase; Identified by match to protein family HMM PF01070.	Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.410
ABK72067.1	ABK74218.1	MSMEG_1424	MSMEG_3962	FMN-dependent dehydrogenase; Identified by match to protein family HMM PF01070.	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	0.925
ABK73027.1	ABK71617.1	MSMEG_3986	MSMEG_2512	Acetyl-coenzyme A synthetase; Identified by match to protein family HMM PF00501.	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	0.913
ABK73027.1	ABK73889.1	MSMEG_3986	MSMEG_3985	Acetyl-coenzyme A synthetase; Identified by match to protein family HMM PF00501.	Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.635
ABK73027.1	ABK74218.1	MSMEG_3986	MSMEG_3962	Acetyl-coenzyme A synthetase; Identified by match to protein family HMM PF00501.	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	0.914
ABK73027.1	ABK75610.1	MSMEG_3986	MSMEG_3987	Acetyl-coenzyme A synthetase; Identified by match to protein family HMM PF00501.	FAD dependent oxidoreductase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266.	0.758
ABK73116.1	ABK73889.1	MSMEG_3984	MSMEG_3985	Identified by match to protein family HMM PF01548; match to protein family HMM PF02371.	Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	0.437
ABK73889.1	ABK71617.1	MSMEG_3985	MSMEG_2512	Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	0.409
ABK73889.1	ABK72067.1	MSMEG_3985	MSMEG_1424	Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	FMN-dependent dehydrogenase; Identified by match to protein family HMM PF01070.	0.410
ABK73889.1	ABK73027.1	MSMEG_3985	MSMEG_3986	Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Acetyl-coenzyme A synthetase; Identified by match to protein family HMM PF00501.	0.635
ABK73889.1	ABK73116.1	MSMEG_3985	MSMEG_3984	Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Identified by match to protein family HMM PF01548; match to protein family HMM PF02371.	0.437
ABK73889.1	ABK74218.1	MSMEG_3985	MSMEG_3962	Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	0.414
ABK73889.1	ABK75610.1	MSMEG_3985	MSMEG_3987	Integral membrane transport protein; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690.	FAD dependent oxidoreductase; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266.	0.522
ABK74218.1	ABK71617.1	MSMEG_3962	MSMEG_2512	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	0.903
ABK74218.1	ABK72067.1	MSMEG_3962	MSMEG_1424	Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070.	FMN-dependent dehydrogenase; Identified by match to protein family HMM PF01070.	0.925

page 1 of 2

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Textmining

Coexpression

Experiments

Fusion

© STRING Consortium 2023

Credits

Access

Info

About