Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK71506.1 | ABK73942.1 | MSMEG_4122 | MSMEG_4121 | Major facilitator family protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. | GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. | 0.481 |
ABK71506.1 | ABK74218.1 | MSMEG_4122 | MSMEG_3962 | Major facilitator family protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. | Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070. | 0.400 |
ABK73942.1 | ABK71506.1 | MSMEG_4121 | MSMEG_4122 | GntR-family protein transcriptional regulator; Identified by match to protein family HMM PF00392; match to protein family HMM PF07729. | Major facilitator family protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. | 0.481 |
ABK74218.1 | ABK71506.1 | MSMEG_3962 | MSMEG_4122 | Lactate 2-monooxygenase; Identified by match to protein family HMM PF01070. | Major facilitator family protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. | 0.400 |