Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK69781.1 | ABK74333.1 | MSMEG_4137 | MSMEG_4136 | Hypothetical protein; Identified by Glimmer2; putative. | dTDP-glucose 4,6-dehydratase. | 0.792 |
| ABK69781.1 | ABK75603.1 | MSMEG_4137 | MSMEG_4135 | Hypothetical protein; Identified by Glimmer2; putative. | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | 0.666 |
| ABK71415.1 | ABK75603.1 | MSMEG_2313 | MSMEG_4135 | Ribonucleoside-diphosphate reductase, beta subunit; Identified by match to protein family HMM PF00268. | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | 0.401 |
| ABK71415.1 | nrdE1 | MSMEG_2313 | MSMEG_1019 | Ribonucleoside-diphosphate reductase, beta subunit; Identified by match to protein family HMM PF00268. | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity); Belongs to the ribonucleoside diphosphate reductase large chain family. | 0.979 |
| ABK74333.1 | ABK69781.1 | MSMEG_4136 | MSMEG_4137 | dTDP-glucose 4,6-dehydratase. | Hypothetical protein; Identified by Glimmer2; putative. | 0.792 |
| ABK74333.1 | ABK75603.1 | MSMEG_4136 | MSMEG_4135 | dTDP-glucose 4,6-dehydratase. | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | 0.685 |
| ABK75603.1 | ABK69781.1 | MSMEG_4135 | MSMEG_4137 | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.666 |
| ABK75603.1 | ABK71415.1 | MSMEG_4135 | MSMEG_2313 | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | Ribonucleoside-diphosphate reductase, beta subunit; Identified by match to protein family HMM PF00268. | 0.401 |
| ABK75603.1 | ABK74333.1 | MSMEG_4135 | MSMEG_4136 | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | dTDP-glucose 4,6-dehydratase. | 0.685 |
| ABK75603.1 | gpgS | MSMEG_4135 | MSMEG_5084 | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | Glycosyl transferase, group 2 family protein; Involved in the biosynthesis of 6-O-methylglucose lipopolysaccarides (MGLPs). Catalyzes the transfer of a glucose (Glc) moiety from uridine diphosphate (UDP-Glc) to the position 2 of 3-phospho-D-glycerate (3- PGA) to form glucosyl-3-phosphoglycerate (GPG). It can use UDP-glucose, ADP-glucose and GDP-glucose as donor substrates with decreasing affinity, and 3-PGA as an acceptor. D-glycerate could only be the acceptor with ADP- glucose and at a very low rate. | 0.400 |
| ABK75603.1 | maf | MSMEG_4135 | MSMEG_1811 | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.509 |
| ABK75603.1 | miaA | MSMEG_4135 | MSMEG_2734 | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.542 |
| ABK75603.1 | miaB | MSMEG_4135 | MSMEG_2729 | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | tRNA-I(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.506 |
| ABK75603.1 | nrdB | MSMEG_4135 | MSMEG_0358 | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | Ribonucleoside-diphosphate reductase, beta subunit; Probable oxidase that might be involved in lipid metabolism. Belongs to the ribonucleoside diphosphate reductase small chain family. R2-like ligand binding oxidase subfamily. | 0.400 |
| ABK75603.1 | nrdE1 | MSMEG_4135 | MSMEG_1019 | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides (By similarity); Belongs to the ribonucleoside diphosphate reductase large chain family. | 0.403 |
| gpgS | ABK75603.1 | MSMEG_5084 | MSMEG_4135 | Glycosyl transferase, group 2 family protein; Involved in the biosynthesis of 6-O-methylglucose lipopolysaccarides (MGLPs). Catalyzes the transfer of a glucose (Glc) moiety from uridine diphosphate (UDP-Glc) to the position 2 of 3-phospho-D-glycerate (3- PGA) to form glucosyl-3-phosphoglycerate (GPG). It can use UDP-glucose, ADP-glucose and GDP-glucose as donor substrates with decreasing affinity, and 3-PGA as an acceptor. D-glycerate could only be the acceptor with ADP- glucose and at a very low rate. | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | 0.400 |
| maf | ABK75603.1 | MSMEG_1811 | MSMEG_4135 | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | 0.509 |
| maf | miaA | MSMEG_1811 | MSMEG_2734 | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.486 |
| maf | miaB | MSMEG_1811 | MSMEG_2729 | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | tRNA-I(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.408 |
| miaA | ABK75603.1 | MSMEG_2734 | MSMEG_4135 | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | Possible lysine decarboxylase superfamily protein; Identified by match to protein family HMM PF03641; Belongs to the LOG family. | 0.542 |
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