Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70833.1 | ABK71821.1 | MSMEG_3975 | MSMEG_1506 | Regulatory protein, putative; Identified by match to protein family HMM PF07905. | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. | 0.770 |
| ABK70833.1 | ABK72968.1 | MSMEG_3975 | MSMEG_4204 | Regulatory protein, putative; Identified by match to protein family HMM PF07905. | Catalase. | 0.438 |
| ABK70833.1 | ABK74950.1 | MSMEG_3975 | MSMEG_4202 | Regulatory protein, putative; Identified by match to protein family HMM PF07905. | Conserved hypothetical protein. | 0.729 |
| ABK70833.1 | ABK75805.1 | MSMEG_3975 | MSMEG_4203 | Regulatory protein, putative; Identified by match to protein family HMM PF07905. | Peptidase S8 and S53, subtilisin, kexin, sedolisin; Identified by match to protein family HMM PF00082. | 0.626 |
| ABK70833.1 | topoM | MSMEG_3975 | MSMEG_0456 | Regulatory protein, putative; Identified by match to protein family HMM PF07905. | DNA gyrase subunit A; Catalyzes the relaxation of negatively supercoiled DNA in the presence of ATP or dATP but not other nucleotides. Individual subunits have no activity. Not able to negatively supercoil DNA, it can however introduce positive supercoils in DNA. Relaxes positive supercoils in an ATP-dependent manner. Catenates and decatenates DNA. Generates dsDNA breaks in the presence of the quinolone antibiotic ciprofloxacin, showing it is a topoisomerase. | 0.730 |
| ABK70833.1 | topoN | MSMEG_3975 | MSMEG_0457 | Regulatory protein, putative; Identified by match to protein family HMM PF07905. | DNA topoisomerase IV subunit B; Catalyzes the relaxation of negatively supercoiled DNA in the presence of ATP or dATP but not other nucleotides. Individual subunits have no activity. Not able to negatively supercoil DNA, it can however introduce positive supercoils in DNA. Relaxes positive supercoils in an ATP-dependent manner. Catenates and decatenates DNA. Generates dsDNA breaks in the presence of the quinolone antibiotic ciprofloxacin, showing it is a topoisomerase. | 0.752 |
| ABK71821.1 | ABK70833.1 | MSMEG_1506 | MSMEG_3975 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. | Regulatory protein, putative; Identified by match to protein family HMM PF07905. | 0.770 |
| ABK71821.1 | ABK74950.1 | MSMEG_1506 | MSMEG_4202 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. | Conserved hypothetical protein. | 0.572 |
| ABK71821.1 | ABK75805.1 | MSMEG_1506 | MSMEG_4203 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. | Peptidase S8 and S53, subtilisin, kexin, sedolisin; Identified by match to protein family HMM PF00082. | 0.480 |
| ABK71821.1 | topoM | MSMEG_1506 | MSMEG_0456 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. | DNA gyrase subunit A; Catalyzes the relaxation of negatively supercoiled DNA in the presence of ATP or dATP but not other nucleotides. Individual subunits have no activity. Not able to negatively supercoil DNA, it can however introduce positive supercoils in DNA. Relaxes positive supercoils in an ATP-dependent manner. Catenates and decatenates DNA. Generates dsDNA breaks in the presence of the quinolone antibiotic ciprofloxacin, showing it is a topoisomerase. | 0.617 |
| ABK71821.1 | topoN | MSMEG_1506 | MSMEG_0457 | Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440. | DNA topoisomerase IV subunit B; Catalyzes the relaxation of negatively supercoiled DNA in the presence of ATP or dATP but not other nucleotides. Individual subunits have no activity. Not able to negatively supercoil DNA, it can however introduce positive supercoils in DNA. Relaxes positive supercoils in an ATP-dependent manner. Catenates and decatenates DNA. Generates dsDNA breaks in the presence of the quinolone antibiotic ciprofloxacin, showing it is a topoisomerase. | 0.685 |
| ABK72968.1 | ABK70833.1 | MSMEG_4204 | MSMEG_3975 | Catalase. | Regulatory protein, putative; Identified by match to protein family HMM PF07905. | 0.438 |
| ABK72968.1 | ABK73937.1 | MSMEG_4204 | MSMEG_4205 | Catalase. | Putative transcriptional regulator; Identified by match to protein family HMM PF00196; match to protein family HMM PF07721. | 0.749 |
| ABK72968.1 | ABK74950.1 | MSMEG_4204 | MSMEG_4202 | Catalase. | Conserved hypothetical protein. | 0.680 |
| ABK72968.1 | ABK75805.1 | MSMEG_4204 | MSMEG_4203 | Catalase. | Peptidase S8 and S53, subtilisin, kexin, sedolisin; Identified by match to protein family HMM PF00082. | 0.717 |
| ABK73759.1 | ABK73937.1 | MSMEG_3288 | MSMEG_4205 | LysM domain protein; Identified by match to protein family HMM PF01476. | Putative transcriptional regulator; Identified by match to protein family HMM PF00196; match to protein family HMM PF07721. | 0.594 |
| ABK73759.1 | ABK74950.1 | MSMEG_3288 | MSMEG_4202 | LysM domain protein; Identified by match to protein family HMM PF01476. | Conserved hypothetical protein. | 0.590 |
| ABK73759.1 | ABK75805.1 | MSMEG_3288 | MSMEG_4203 | LysM domain protein; Identified by match to protein family HMM PF01476. | Peptidase S8 and S53, subtilisin, kexin, sedolisin; Identified by match to protein family HMM PF00082. | 0.447 |
| ABK73937.1 | ABK72968.1 | MSMEG_4205 | MSMEG_4204 | Putative transcriptional regulator; Identified by match to protein family HMM PF00196; match to protein family HMM PF07721. | Catalase. | 0.749 |
| ABK73937.1 | ABK73759.1 | MSMEG_4205 | MSMEG_3288 | Putative transcriptional regulator; Identified by match to protein family HMM PF00196; match to protein family HMM PF07721. | LysM domain protein; Identified by match to protein family HMM PF01476. | 0.594 |
page 1 of 3