STRINGSTRING
ABK71899.1 ABK71899.1 lipB lipB lipA lipA ABK73069.1 ABK73069.1 ABK71361.1 ABK71361.1 ABK73409.1 ABK73409.1 ABK76071.1 ABK76071.1 ABK72175.1 ABK72175.1 ABK76233.1 ABK76233.1 sucB sucB ABK71810.1 ABK71810.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ABK71899.1Amidohydrolase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969. (602 aa)    
Predicted Functional Partners:
lipB
Lipoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
  
    0.667
lipA
Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
  
    0.666
ABK73069.1
Integral membrane protein.
  
    0.664
ABK71361.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM TIGR01777.
  
    0.626
ABK73409.1
FxsA cytoplasmic membrane protein; Identified by match to protein family HMM PF04186.
  
    0.586
ABK76071.1
Amidohydrolase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
 
    0.536
ABK72175.1
Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
 
     0.533
ABK76233.1
Amidohydrolase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
 
    0.532
sucB
2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; Identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR02927.
  
    0.499
ABK71810.1
Organophopsphate acid anhydrase; Identified by match to protein family HMM PF01979.
 
    0.444
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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