ABK70291.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK70291.1

enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378. (261 aa)

Predicted Functional Partners:

ABK74938.1

0.923

ABK70651.1

0.920

ABK75633.1

0.834

ABK70416.1

0.818

ABK72727.1

0.798

ABK70859.1

0.765

ABK75265.1

0.763

ABK71507.1

0.762

ABK71003.1

0.762

ABK74969.1

0.762

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70291.1	ABK70416.1	MSMEG_4299	MSMEG_3132	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	DNA-binding protein.	0.818
ABK70291.1	ABK70651.1	MSMEG_4299	MSMEG_2220	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	0.920
ABK70291.1	ABK70859.1	MSMEG_4299	MSMEG_1048	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.765
ABK70291.1	ABK71003.1	MSMEG_4299	MSMEG_5620	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.762
ABK70291.1	ABK71507.1	MSMEG_4299	MSMEG_4846	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.762
ABK70291.1	ABK72727.1	MSMEG_4299	MSMEG_4300	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	Transcription regulator AmtR; Identified by match to protein family HMM PF00440.	0.798
ABK70291.1	ABK74938.1	MSMEG_4299	MSMEG_6774	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.923
ABK70291.1	ABK74969.1	MSMEG_4299	MSMEG_6001	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.762
ABK70291.1	ABK75265.1	MSMEG_4299	MSMEG_5886	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.763
ABK70291.1	ABK75633.1	MSMEG_4299	MSMEG_4301	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	0.834
ABK70416.1	ABK70291.1	MSMEG_3132	MSMEG_4299	DNA-binding protein.	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	0.818
ABK70651.1	ABK70291.1	MSMEG_2220	MSMEG_4299	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	0.920
ABK70651.1	ABK70859.1	MSMEG_2220	MSMEG_1048	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.765
ABK70651.1	ABK71003.1	MSMEG_2220	MSMEG_5620	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.761
ABK70651.1	ABK71507.1	MSMEG_2220	MSMEG_4846	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.772
ABK70651.1	ABK74938.1	MSMEG_2220	MSMEG_6774	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.	0.927
ABK70651.1	ABK74969.1	MSMEG_2220	MSMEG_6001	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.763
ABK70651.1	ABK75265.1	MSMEG_2220	MSMEG_5886	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	0.772
ABK70859.1	ABK70291.1	MSMEG_1048	MSMEG_4299	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	0.765
ABK70859.1	ABK70651.1	MSMEG_1048	MSMEG_2220	Probable enoyl-CoA hydratase; Identified by match to protein family HMM PF00378.	enoyl-CoA hydratase/isomerase; Identified by match to protein family HMM PF00378.	0.765