ABK70599.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK70599.1

Conserved hypothetical protein; Identified by match to protein family HMM PF02591. (242 aa)

Predicted Functional Partners:

ABK73705.1

0.994

ABK69912.1

0.993

ABK71949.1

0.821

ABK69679.1

0.812

ABK74298.1

0.798

ABK73730.1

0.739

ABK72590.1

0.734

ABK71061.1

0.729

ABK73491.1

0.726

ABK74818.1

0.724

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69679.1	ABK69912.1	MSMEG_4267	MSMEG_4305	Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.	Phosphoglycerate mutase; Identified by match to protein family HMM PF00300.	0.616
ABK69679.1	ABK70599.1	MSMEG_4267	MSMEG_4306	Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	0.812
ABK69679.1	ABK71061.1	MSMEG_4267	MSMEG_2782	Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	0.627
ABK69679.1	ABK72590.1	MSMEG_4267	MSMEG_4311	Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.	Conserved hypothetical protein.	0.484
ABK69679.1	ABK73705.1	MSMEG_4267	MSMEG_4307	Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.	Conserved hypothetical protein; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.	0.762
ABK69679.1	ABK74818.1	MSMEG_4267	MSMEG_0754	Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.	Conserved hypothetical protein.	0.528
ABK69912.1	ABK69679.1	MSMEG_4305	MSMEG_4267	Phosphoglycerate mutase; Identified by match to protein family HMM PF00300.	Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.	0.616
ABK69912.1	ABK70599.1	MSMEG_4305	MSMEG_4306	Phosphoglycerate mutase; Identified by match to protein family HMM PF00300.	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	0.993
ABK69912.1	ABK72590.1	MSMEG_4305	MSMEG_4311	Phosphoglycerate mutase; Identified by match to protein family HMM PF00300.	Conserved hypothetical protein.	0.522
ABK69912.1	ABK73705.1	MSMEG_4305	MSMEG_4307	Phosphoglycerate mutase; Identified by match to protein family HMM PF00300.	Conserved hypothetical protein; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.	0.991
ABK70599.1	ABK69679.1	MSMEG_4306	MSMEG_4267	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.	0.812
ABK70599.1	ABK69912.1	MSMEG_4306	MSMEG_4305	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	Phosphoglycerate mutase; Identified by match to protein family HMM PF00300.	0.993
ABK70599.1	ABK71061.1	MSMEG_4306	MSMEG_2782	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	Conserved hypothetical protein; Identified by match to protein family HMM PF06778.	0.729
ABK70599.1	ABK71949.1	MSMEG_4306	MSMEG_4994	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	Flagella membrane glycoprotein 1B, putative.	0.821
ABK70599.1	ABK72590.1	MSMEG_4306	MSMEG_4311	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	Conserved hypothetical protein.	0.734
ABK70599.1	ABK73491.1	MSMEG_4306	MSMEG_1342	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	Conserved hypothetical protein; Belongs to the UPF0336 family.	0.726
ABK70599.1	ABK73705.1	MSMEG_4306	MSMEG_4307	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	Conserved hypothetical protein; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.	0.994
ABK70599.1	ABK73730.1	MSMEG_4306	MSMEG_5512	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	Magnesium chelatase.	0.739
ABK70599.1	ABK74298.1	MSMEG_4306	MSMEG_3754	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	TPR-repeat-containing protein.	0.798
ABK70599.1	ABK74818.1	MSMEG_4306	MSMEG_0754	Conserved hypothetical protein; Identified by match to protein family HMM PF02591.	Conserved hypothetical protein.	0.724