STRINGSTRING
ABK72590.1 ABK72590.1 ABK72041.1 ABK72041.1 ABK73728.1 ABK73728.1 ABK75919.1 ABK75919.1 cyoE cyoE ABK74914.1 ABK74914.1 ABK70599.1 ABK70599.1 secY secY ctaD ctaD ABK75942.1 ABK75942.1 ABK73705.1 ABK73705.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72590.1Conserved hypothetical protein. (277 aa)    
Predicted Functional Partners:
ABK72041.1
Cytochrome aa3 controlling protein; Identified by match to protein family HMM PF02628.
 
 
 0.923
ABK73728.1
5'-nucleotidase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.
  
    0.808
ABK75919.1
Low molecular weight protein-tyrosine-phosphatase; Identified by match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
    0.808
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.785
ABK74914.1
Cytochrome c oxidase subunit 2; Identified by match to protein family HMM PF00116.
 
 
 0.765
ABK70599.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02591.
 
    0.734
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
   
   0.732
ctaD
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
 
 0.712
ABK75942.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Identified by match to protein family HMM PF00355.
  
 
 0.706
ABK73705.1
Conserved hypothetical protein; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
    0.698
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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