ABK71812.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK71812.1

Conserved hypothetical protein. (237 aa)

Predicted Functional Partners:

ABK70006.1

0.880

ABK70615.1

0.855

ABK75428.1

0.532

ABK73643.1

0.481

ABK75249.1

0.422

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70006.1	ABK70615.1	MSMEG_4315	MSMEG_4316	RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.	0.963
ABK70006.1	ABK71812.1	MSMEG_4315	MSMEG_4317	RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	Conserved hypothetical protein.	0.880
ABK70006.1	ABK73643.1	MSMEG_4315	MSMEG_4318	RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Identified by Glimmer2; putative.	0.480
ABK70006.1	ABK75249.1	MSMEG_4315	MSMEG_4313	RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	Glyoxalase/bleomycin resistance protein/dioxygenase; Identified by match to protein family HMM PF00903.	0.420
ABK70006.1	ABK75428.1	MSMEG_4315	MSMEG_4314	RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Identified by Glimmer2; putative.	0.540
ABK70615.1	ABK70006.1	MSMEG_4316	MSMEG_4315	methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.	RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	0.963
ABK70615.1	ABK71812.1	MSMEG_4316	MSMEG_4317	methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.	Conserved hypothetical protein.	0.855
ABK70615.1	ABK73643.1	MSMEG_4316	MSMEG_4318	methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.	Hypothetical protein; Identified by Glimmer2; putative.	0.481
ABK70615.1	ABK75249.1	MSMEG_4316	MSMEG_4313	methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.	Glyoxalase/bleomycin resistance protein/dioxygenase; Identified by match to protein family HMM PF00903.	0.443
ABK70615.1	ABK75428.1	MSMEG_4316	MSMEG_4314	methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.	Hypothetical protein; Identified by Glimmer2; putative.	0.532
ABK71812.1	ABK70006.1	MSMEG_4317	MSMEG_4315	Conserved hypothetical protein.	RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	0.880
ABK71812.1	ABK70615.1	MSMEG_4317	MSMEG_4316	Conserved hypothetical protein.	methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.	0.855
ABK71812.1	ABK73643.1	MSMEG_4317	MSMEG_4318	Conserved hypothetical protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.481
ABK71812.1	ABK75249.1	MSMEG_4317	MSMEG_4313	Conserved hypothetical protein.	Glyoxalase/bleomycin resistance protein/dioxygenase; Identified by match to protein family HMM PF00903.	0.422
ABK71812.1	ABK75428.1	MSMEG_4317	MSMEG_4314	Conserved hypothetical protein.	Hypothetical protein; Identified by Glimmer2; putative.	0.532
ABK73643.1	ABK70006.1	MSMEG_4318	MSMEG_4315	Hypothetical protein; Identified by Glimmer2; putative.	RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	0.480
ABK73643.1	ABK70615.1	MSMEG_4318	MSMEG_4316	Hypothetical protein; Identified by Glimmer2; putative.	methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.	0.481
ABK73643.1	ABK71812.1	MSMEG_4318	MSMEG_4317	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein.	0.481
ABK75249.1	ABK70006.1	MSMEG_4313	MSMEG_4315	Glyoxalase/bleomycin resistance protein/dioxygenase; Identified by match to protein family HMM PF00903.	RNA polymerase sigma factor, sigma-70 family protein; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	0.420
ABK75249.1	ABK70615.1	MSMEG_4313	MSMEG_4316	Glyoxalase/bleomycin resistance protein/dioxygenase; Identified by match to protein family HMM PF00903.	methylated-DNA--protein-cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.	0.443