STRINGSTRING
ABK75666.1 ABK75666.1 ABK70103.1 ABK70103.1 ABK71456.1 ABK71456.1 mdcH mdcH ABK72199.1 ABK72199.1 ABK70370.1 ABK70370.1 ABK76106.1 ABK76106.1 ABK72679.1 ABK72679.1 ABK70012.1 ABK70012.1 ABK71307.1 ABK71307.1 ABK70743.1 ABK70743.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75666.1Short chain dehydrogenase; Identified by match to protein family HMM PF00106. (249 aa)    
Predicted Functional Partners:
ABK70103.1
Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.
  
 0.741
ABK71456.1
Putative transcriptional regulator; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
    0.653
mdcH
Malonate decarboxylase, epsilon subunit; Identified by match to protein family HMM PF00698; match to protein family HMM TIGR03131.
 
 
 0.538
ABK72199.1
Two-component sensor histidine kinase; Identified by match to protein family HMM PF00027; match to protein family HMM PF02518.
  
 0.520
ABK70370.1
Cyclic nucleotide-binding protein; Catalyzes specifically the acetylation of the epsilon-amino group of a highly conserved lysine residue in acetyl-CoA synthetase (ACS) and of the universal stress protein (USP) MSMEG_4207. Acetylation results in the inactivation of ACS activity and could be important for mycobacteria to adjust to environmental changes.
  
 0.516
ABK76106.1
Probable conserved transmembrane protein; Identified by match to protein family HMM PF00027; match to protein family HMM PF00924.
  
 0.510
ABK72679.1
Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.
  
 0.504
ABK70012.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.
  
    0.502
ABK71307.1
Identified by match to protein family HMM PF00884.
   
 
 0.492
ABK70743.1
Major membrane protein I.
  
 0.492
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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