STRINGSTRING
ABK71831.1 ABK71831.1 ABK73898.1 ABK73898.1 rpsF rpsF ABK71946.1 ABK71946.1 ABK73990.1 ABK73990.1 ABK70832.1 ABK70832.1 rpsL rpsL ABK70539.1 ABK70539.1 ABK75452.1 ABK75452.1 rpsB rpsB ABK72867.1 ABK72867.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK71831.1Conserved hypothetical protein. (448 aa)    
Predicted Functional Partners:
ABK73898.1
Identified by match to protein family HMM PF00582.
 
  
 0.618
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.588
ABK71946.1
Conserved hypothetical proline and threonine rich protein.
 
  
 0.558
ABK73990.1
Conserved hypothetical protein.
 
 
 0.550
ABK70832.1
Tuberculin related peptide.
  
    0.526
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
  
 
 0.524
ABK70539.1
Conserved hypothetical protein.
 
  
 0.520
ABK75452.1
Similar to Streptomyces cyclase/dehydrase family protein; identified by match to protein family HMM PF03364.
  
   
 0.516
rpsB
Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.515
ABK72867.1
Conserved hypothetical proline rich protein.
 
  
 0.504
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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