ABK75988.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK75988.1

Monooxygenase, NtaA/SnaA/SoxA family protein. (456 aa)

Predicted Functional Partners:

ABK74612.1

0.903

ABK74224.1

0.793

ABK70693.1

0.785

ABK73656.1

0.782

ABK71226.1

0.782

ssuD-3

0.772

ABK74734.1

0.697

ABK70934.1

0.657

ABK73261.1

0.637

ABK74629.1

0.623

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70693.1	ABK71226.1	MSMEG_4388	MSMEG_4387	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	0.968
ABK70693.1	ABK73656.1	MSMEG_4388	MSMEG_4385	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter oligopeptide binding protein; Identified by match to protein family HMM PF00496.	0.917
ABK70693.1	ABK74224.1	MSMEG_4388	MSMEG_4386	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	0.962
ABK70693.1	ABK74612.1	MSMEG_4388	MSMEG_4391	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	acyl-CoA dehydrogenase-family protein; Identified by match to protein family HMM PF08028.	0.788
ABK70693.1	ABK75988.1	MSMEG_4388	MSMEG_4389	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Monooxygenase, NtaA/SnaA/SoxA family protein.	0.785
ABK70934.1	ABK75988.1	MSMEG_3259	MSMEG_4389	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF08028.	Monooxygenase, NtaA/SnaA/SoxA family protein.	0.657
ABK71226.1	ABK70693.1	MSMEG_4387	MSMEG_4388	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.968
ABK71226.1	ABK73656.1	MSMEG_4387	MSMEG_4385	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	ABC transporter oligopeptide binding protein; Identified by match to protein family HMM PF00496.	0.971
ABK71226.1	ABK74224.1	MSMEG_4387	MSMEG_4386	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	0.969
ABK71226.1	ABK74612.1	MSMEG_4387	MSMEG_4391	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	acyl-CoA dehydrogenase-family protein; Identified by match to protein family HMM PF08028.	0.783
ABK71226.1	ABK75988.1	MSMEG_4387	MSMEG_4389	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	Monooxygenase, NtaA/SnaA/SoxA family protein.	0.782
ABK73261.1	ABK75988.1	MSMEG_5001	MSMEG_4389	Pesticide degrading monooxygenase; Identified by match to protein family HMM PF08028.	Monooxygenase, NtaA/SnaA/SoxA family protein.	0.637
ABK73656.1	ABK70693.1	MSMEG_4385	MSMEG_4388	ABC transporter oligopeptide binding protein; Identified by match to protein family HMM PF00496.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.917
ABK73656.1	ABK71226.1	MSMEG_4385	MSMEG_4387	ABC transporter oligopeptide binding protein; Identified by match to protein family HMM PF00496.	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	0.971
ABK73656.1	ABK74224.1	MSMEG_4385	MSMEG_4386	ABC transporter oligopeptide binding protein; Identified by match to protein family HMM PF00496.	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	0.973
ABK73656.1	ABK74612.1	MSMEG_4385	MSMEG_4391	ABC transporter oligopeptide binding protein; Identified by match to protein family HMM PF00496.	acyl-CoA dehydrogenase-family protein; Identified by match to protein family HMM PF08028.	0.819
ABK73656.1	ABK75988.1	MSMEG_4385	MSMEG_4389	ABC transporter oligopeptide binding protein; Identified by match to protein family HMM PF00496.	Monooxygenase, NtaA/SnaA/SoxA family protein.	0.782
ABK74224.1	ABK70693.1	MSMEG_4386	MSMEG_4388	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.962
ABK74224.1	ABK71226.1	MSMEG_4386	MSMEG_4387	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	0.969
ABK74224.1	ABK73656.1	MSMEG_4386	MSMEG_4385	ABC transporter permease protein; Identified by match to protein family HMM PF00528.	ABC transporter oligopeptide binding protein; Identified by match to protein family HMM PF00496.	0.973