Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70247.1 | ABK71546.1 | MSMEG_3658 | MSMEG_4408 | Conserved hypothetical protein. | Integral membrane protein; Identified by match to protein family HMM PF04224. | 0.412 |
ABK71546.1 | ABK70247.1 | MSMEG_4408 | MSMEG_3658 | Integral membrane protein; Identified by match to protein family HMM PF04224. | Conserved hypothetical protein. | 0.412 |
ABK71546.1 | ABK71606.1 | MSMEG_4408 | MSMEG_4421 | Integral membrane protein; Identified by match to protein family HMM PF04224. | Conserved hypothetical protein. | 0.457 |
ABK71546.1 | ABK71923.1 | MSMEG_4408 | MSMEG_4407 | Integral membrane protein; Identified by match to protein family HMM PF04224. | Conserved hypothetical protein. | 0.737 |
ABK71546.1 | ABK72144.1 | MSMEG_4408 | MSMEG_4409 | Integral membrane protein; Identified by match to protein family HMM PF04224. | Hypothetical protein; Identified by Glimmer2; putative. | 0.542 |
ABK71546.1 | ABK72336.1 | MSMEG_4408 | MSMEG_4406 | Integral membrane protein; Identified by match to protein family HMM PF04224. | UsfY protein. | 0.640 |
ABK71546.1 | ABK72704.1 | MSMEG_4408 | MSMEG_4807 | Integral membrane protein; Identified by match to protein family HMM PF04224. | Identified by match to protein family HMM PF04909. | 0.418 |
ABK71546.1 | ABK73474.1 | MSMEG_4408 | MSMEG_4426 | Integral membrane protein; Identified by match to protein family HMM PF04224. | Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368. | 0.483 |
ABK71546.1 | ABK74796.1 | MSMEG_4408 | MSMEG_4420 | Integral membrane protein; Identified by match to protein family HMM PF04224. | Cupin 2, conserved barrel; Identified by match to protein family HMM PF07883. | 0.616 |
ABK71546.1 | ABK74948.1 | MSMEG_4408 | MSMEG_4405 | Integral membrane protein; Identified by match to protein family HMM PF04224. | Putative ECF sigma factor RpoE1; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | 0.444 |
ABK71546.1 | ABK76137.1 | MSMEG_4408 | MSMEG_3179 | Integral membrane protein; Identified by match to protein family HMM PF04224. | Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243. | 0.477 |
ABK71606.1 | ABK71546.1 | MSMEG_4421 | MSMEG_4408 | Conserved hypothetical protein. | Integral membrane protein; Identified by match to protein family HMM PF04224. | 0.457 |
ABK71606.1 | ABK74796.1 | MSMEG_4421 | MSMEG_4420 | Conserved hypothetical protein. | Cupin 2, conserved barrel; Identified by match to protein family HMM PF07883. | 0.850 |
ABK71923.1 | ABK71546.1 | MSMEG_4407 | MSMEG_4408 | Conserved hypothetical protein. | Integral membrane protein; Identified by match to protein family HMM PF04224. | 0.737 |
ABK71923.1 | ABK72144.1 | MSMEG_4407 | MSMEG_4409 | Conserved hypothetical protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.514 |
ABK71923.1 | ABK72336.1 | MSMEG_4407 | MSMEG_4406 | Conserved hypothetical protein. | UsfY protein. | 0.695 |
ABK71923.1 | ABK74948.1 | MSMEG_4407 | MSMEG_4405 | Conserved hypothetical protein. | Putative ECF sigma factor RpoE1; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. | 0.505 |
ABK72144.1 | ABK71546.1 | MSMEG_4409 | MSMEG_4408 | Hypothetical protein; Identified by Glimmer2; putative. | Integral membrane protein; Identified by match to protein family HMM PF04224. | 0.542 |
ABK72144.1 | ABK71923.1 | MSMEG_4409 | MSMEG_4407 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein. | 0.514 |
ABK72144.1 | ABK72336.1 | MSMEG_4409 | MSMEG_4406 | Hypothetical protein; Identified by Glimmer2; putative. | UsfY protein. | 0.454 |
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