ABK70168.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK70168.1

Beta-lactamase; Identified by match to protein family HMM PF00144. (414 aa)

Predicted Functional Partners:

dacB

0.836

ABK70477.1

0.829

ABK71200.1

0.785

ABK73743.1

0.700

ABK75451.1

0.683

ABK73008.1

0.606

ABK75131.1

0.598

ABK73230.1

0.559

ABK71878.1

0.548

ltaE

0.477

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70168.1	ABK70477.1	MSMEG_4455	MSMEG_0929	Beta-lactamase; Identified by match to protein family HMM PF00144.	Identified by match to protein family HMM PF03734.	0.829
ABK70168.1	ABK71200.1	MSMEG_4455	MSMEG_4640	Beta-lactamase; Identified by match to protein family HMM PF00144.	Identified by match to protein family HMM PF06737.	0.785
ABK70168.1	ABK71878.1	MSMEG_4455	MSMEG_2433	Beta-lactamase; Identified by match to protein family HMM PF00144.	D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.	0.548
ABK70168.1	ABK73008.1	MSMEG_4455	MSMEG_6112	Beta-lactamase; Identified by match to protein family HMM PF00144.	Conserved hypothetical protein.	0.606
ABK70168.1	ABK73230.1	MSMEG_4455	MSMEG_1661	Beta-lactamase; Identified by match to protein family HMM PF00144.	D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.	0.559
ABK70168.1	ABK73743.1	MSMEG_4455	MSMEG_2432	Beta-lactamase; Identified by match to protein family HMM PF00144.	D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.	0.700
ABK70168.1	ABK75131.1	MSMEG_4455	MSMEG_1900	Beta-lactamase; Identified by match to protein family HMM PF00144.	Identified by match to protein family HMM PF02557.	0.598
ABK70168.1	ABK75451.1	MSMEG_4455	MSMEG_5156	Beta-lactamase; Identified by match to protein family HMM PF00144.	Base excision DNA repair protein, HhH-GPD family protein; Identified by match to protein family HMM PF00730.	0.683
ABK70168.1	dacB	MSMEG_4455	MSMEG_6113	Beta-lactamase; Identified by match to protein family HMM PF00144.	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Carboxypeptidase that cleaves terminal D-alanine from peptidoglycan in the mycobacterial cell wall. May cleave L-Lys-D-Ala and/or D-Ala-D-Ala peptide bonds. Exerts important effects on mycobacterial cell morphology and cell division. Belongs to the peptidase S13 family.	0.836
ABK70168.1	ltaE	MSMEG_4455	MSMEG_4454	Beta-lactamase; Identified by match to protein family HMM PF00144.	L-threonine aldolase, low-specificity; Identified by similarity to SP:O50584; match to protein family HMM PF00282; match to protein family HMM PF01212.	0.477
ABK70477.1	ABK70168.1	MSMEG_0929	MSMEG_4455	Identified by match to protein family HMM PF03734.	Beta-lactamase; Identified by match to protein family HMM PF00144.	0.829
ABK70477.1	ABK71200.1	MSMEG_0929	MSMEG_4640	Identified by match to protein family HMM PF03734.	Identified by match to protein family HMM PF06737.	0.574
ABK70477.1	dacB	MSMEG_0929	MSMEG_6113	Identified by match to protein family HMM PF03734.	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Carboxypeptidase that cleaves terminal D-alanine from peptidoglycan in the mycobacterial cell wall. May cleave L-Lys-D-Ala and/or D-Ala-D-Ala peptide bonds. Exerts important effects on mycobacterial cell morphology and cell division. Belongs to the peptidase S13 family.	0.690
ABK71200.1	ABK70168.1	MSMEG_4640	MSMEG_4455	Identified by match to protein family HMM PF06737.	Beta-lactamase; Identified by match to protein family HMM PF00144.	0.785
ABK71200.1	ABK70477.1	MSMEG_4640	MSMEG_0929	Identified by match to protein family HMM PF06737.	Identified by match to protein family HMM PF03734.	0.574
ABK71878.1	ABK70168.1	MSMEG_2433	MSMEG_4455	D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.	Beta-lactamase; Identified by match to protein family HMM PF00144.	0.548
ABK71878.1	ABK73008.1	MSMEG_2433	MSMEG_6112	D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.	Conserved hypothetical protein.	0.544
ABK71878.1	ABK73230.1	MSMEG_2433	MSMEG_1661	D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.	0.922
ABK71878.1	ABK73743.1	MSMEG_2433	MSMEG_2432	D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.	0.963
ABK71878.1	ABK75131.1	MSMEG_2433	MSMEG_1900	D-alanyl-D-alanine carboxypeptidase; Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.	Identified by match to protein family HMM PF02557.	0.982