ABK74858.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK74858.1

DNA-binding protein. (334 aa)

Predicted Functional Partners:

ABK70320.1

0.912

ABK74828.1

0.795

ABK70645.1

0.785

ABK74698.1

0.782

ABK72920.1

0.738

ABK75862.1

0.723

ABK73793.1

0.670

ABK75418.1

0.663

ABK74574.1

0.613

ABK72686.1

0.599

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70320.1	ABK70645.1	MSMEG_4649	MSMEG_4656	phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.	Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	0.462
ABK70320.1	ABK72686.1	MSMEG_4649	MSMEG_4664	phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.	IolD protein; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	0.678
ABK70320.1	ABK72920.1	MSMEG_4649	MSMEG_4653	phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.	Identified by match to protein family HMM PF01261; Belongs to the hyi family.	0.832
ABK70320.1	ABK73793.1	MSMEG_4649	MSMEG_4652	phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.	D-oliose 4-ketoreductase; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.	0.799
ABK70320.1	ABK74574.1	MSMEG_4649	MSMEG_4658	phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.	Sugar ABC transporter substrate-binding protein; Identified by match to protein family HMM PF00532.	0.443
ABK70320.1	ABK74698.1	MSMEG_4649	MSMEG_4650	phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.	Putative oxidoreductase YisS; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.	0.911
ABK70320.1	ABK74828.1	MSMEG_4649	MSMEG_4651	phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.	Identified by match to protein family HMM PF01261.	0.869
ABK70320.1	ABK74858.1	MSMEG_4649	MSMEG_4648	phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.	DNA-binding protein.	0.912
ABK70320.1	ABK75418.1	MSMEG_4649	MSMEG_4647	phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.	Carbohydrate kinase, PfkB, putative; Identified by match to protein family HMM PF00294.	0.415
ABK70645.1	ABK70320.1	MSMEG_4656	MSMEG_4649	Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.	0.462
ABK70645.1	ABK72686.1	MSMEG_4656	MSMEG_4664	Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	IolD protein; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	0.746
ABK70645.1	ABK72920.1	MSMEG_4656	MSMEG_4653	Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	Identified by match to protein family HMM PF01261; Belongs to the hyi family.	0.445
ABK70645.1	ABK74574.1	MSMEG_4656	MSMEG_4658	Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	Sugar ABC transporter substrate-binding protein; Identified by match to protein family HMM PF00532.	0.973
ABK70645.1	ABK74698.1	MSMEG_4656	MSMEG_4650	Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative oxidoreductase YisS; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.	0.700
ABK70645.1	ABK74828.1	MSMEG_4656	MSMEG_4651	Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	Identified by match to protein family HMM PF01261.	0.725
ABK70645.1	ABK74858.1	MSMEG_4656	MSMEG_4648	Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	DNA-binding protein.	0.785
ABK70645.1	ABK75862.1	MSMEG_4656	MSMEG_4657	Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter membrane protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.	0.974
ABK72686.1	ABK70320.1	MSMEG_4664	MSMEG_4649	IolD protein; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	phytanoyl-CoA dioxygenase; Identified by match to protein family HMM PF05721.	0.678
ABK72686.1	ABK70645.1	MSMEG_4664	MSMEG_4656	IolD protein; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	Sugar ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	0.746
ABK72686.1	ABK72920.1	MSMEG_4664	MSMEG_4653	IolD protein; Identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; Belongs to the TPP enzyme family.	Identified by match to protein family HMM PF01261; Belongs to the hyi family.	0.563