Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70014.1 | ABK70887.1 | MSMEG_4700 | MSMEG_4701 | ABC-transporter protein, ATP binding component; Identified by match to protein family HMM PF00005. | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.815 |
| ABK70887.1 | ABK70014.1 | MSMEG_4701 | MSMEG_4700 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | ABC-transporter protein, ATP binding component; Identified by match to protein family HMM PF00005. | 0.815 |
| ABK70887.1 | ABK72015.1 | MSMEG_4701 | MSMEG_6153 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | 0.780 |
| ABK70887.1 | ABK72022.1 | MSMEG_4701 | MSMEG_3178 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.762 |
| ABK70887.1 | ABK75351.1 | MSMEG_4701 | MSMEG_6892 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.836 |
| ABK70887.1 | dnaX | MSMEG_4701 | MSMEG_6285 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA polymerase III gamma/tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.879 |
| ABK70887.1 | rpoZ | MSMEG_4701 | MSMEG_3053 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.765 |
| ABK70887.1 | secG | MSMEG_4701 | MSMEG_3087 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.759 |
| ABK70887.1 | ssb | MSMEG_4701 | MSMEG_6896 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.921 |
| ABK70887.1 | topA | MSMEG_4701 | MSMEG_6157 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA sup [...] | 0.775 |
| ABK70887.1 | whiB | MSMEG_4701 | MSMEG_1919 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.764 |
| ABK72015.1 | ABK70887.1 | MSMEG_6153 | MSMEG_4701 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.780 |
| ABK72015.1 | ABK72022.1 | MSMEG_6153 | MSMEG_3178 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.981 |
| ABK72015.1 | ABK75351.1 | MSMEG_6153 | MSMEG_6892 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.657 |
| ABK72015.1 | dnaX | MSMEG_6153 | MSMEG_6285 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA polymerase III gamma/tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.923 |
| ABK72015.1 | rpoZ | MSMEG_6153 | MSMEG_3053 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.404 |
| ABK72015.1 | ssb | MSMEG_6153 | MSMEG_6896 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.814 |
| ABK72015.1 | topA | MSMEG_6153 | MSMEG_6157 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA sup [...] | 0.478 |
| ABK72022.1 | ABK70887.1 | MSMEG_3178 | MSMEG_4701 | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.762 |
| ABK72022.1 | ABK72015.1 | MSMEG_3178 | MSMEG_6153 | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | 0.981 |
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