Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70613.1 | ABK72541.1 | MSMEG_6672 | MSMEG_4721 | Type I phosphodiesterase / nucleotide pyrophosphatase superfamily protein; Identified by match to protein family HMM PF01663. | Permease of the major facilitator superfamily protein; Identified by match to protein family HMM PF07690. | 0.401 |
ABK71182.1 | ABK72541.1 | MSMEG_4722 | MSMEG_4721 | Short-chain dehydrogenase; Identified by match to protein family HMM PF00106. | Permease of the major facilitator superfamily protein; Identified by match to protein family HMM PF07690. | 0.655 |
ABK72541.1 | ABK70613.1 | MSMEG_4721 | MSMEG_6672 | Permease of the major facilitator superfamily protein; Identified by match to protein family HMM PF07690. | Type I phosphodiesterase / nucleotide pyrophosphatase superfamily protein; Identified by match to protein family HMM PF01663. | 0.401 |
ABK72541.1 | ABK71182.1 | MSMEG_4721 | MSMEG_4722 | Permease of the major facilitator superfamily protein; Identified by match to protein family HMM PF07690. | Short-chain dehydrogenase; Identified by match to protein family HMM PF00106. | 0.655 |
ABK72541.1 | ABK74477.1 | MSMEG_4721 | MSMEG_3492 | Permease of the major facilitator superfamily protein; Identified by match to protein family HMM PF07690. | Phosphodiesterase; Identified by match to protein family HMM PF01663. | 0.410 |
ABK74477.1 | ABK72541.1 | MSMEG_3492 | MSMEG_4721 | Phosphodiesterase; Identified by match to protein family HMM PF01663. | Permease of the major facilitator superfamily protein; Identified by match to protein family HMM PF07690. | 0.410 |