Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK69592.1 | ltrA | MSMEG_1384 | MSMEG_4766 | Conserved hypothetical protein; Identified by match to protein family HMM PF05899. | Low temperature requirement protein LtrA; Identified by match to protein family HMM PF06772. | 0.438 |
ABK71273.1 | ltrA | MSMEG_6215 | MSMEG_4766 | Conserved hypothetical protein; Identified by match to protein family HMM PF04402. | Low temperature requirement protein LtrA; Identified by match to protein family HMM PF06772. | 0.501 |
ABK72560.1 | ltrA | MSMEG_4768 | MSMEG_4766 | Transcriptional regulator. | Low temperature requirement protein LtrA; Identified by match to protein family HMM PF06772. | 0.575 |
ltrA | ABK69592.1 | MSMEG_4766 | MSMEG_1384 | Low temperature requirement protein LtrA; Identified by match to protein family HMM PF06772. | Conserved hypothetical protein; Identified by match to protein family HMM PF05899. | 0.438 |
ltrA | ABK71273.1 | MSMEG_4766 | MSMEG_6215 | Low temperature requirement protein LtrA; Identified by match to protein family HMM PF06772. | Conserved hypothetical protein; Identified by match to protein family HMM PF04402. | 0.501 |
ltrA | ABK72560.1 | MSMEG_4766 | MSMEG_4768 | Low temperature requirement protein LtrA; Identified by match to protein family HMM PF06772. | Transcriptional regulator. | 0.575 |
ltrA | relA | MSMEG_4766 | MSMEG_2965 | Low temperature requirement protein LtrA; Identified by match to protein family HMM PF06772. | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.424 |
relA | ltrA | MSMEG_2965 | MSMEG_4766 | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Low temperature requirement protein LtrA; Identified by match to protein family HMM PF06772. | 0.424 |