STRINGSTRING
ABK72560.1 ABK72560.1 ltrA ltrA ABK70833.1 ABK70833.1 ABK71717.1 ABK71717.1 ABK71623.1 ABK71623.1 ABK74862.1 ABK74862.1 ABK72094.1 ABK72094.1 ABK70087.1 ABK70087.1 ABK75465.1 ABK75465.1 ABK75418.1 ABK75418.1 ABK75141.1 ABK75141.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK72560.1Transcriptional regulator. (181 aa)    
Predicted Functional Partners:
ltrA
Low temperature requirement protein LtrA; Identified by match to protein family HMM PF06772.
  
    0.575
ABK70833.1
Regulatory protein, putative; Identified by match to protein family HMM PF07905.
  
    0.508
ABK71717.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.507
ABK71623.1
Integral membrane protein.
 
    0.491
ABK74862.1
Conserved hypothetical protein.
 
  
 0.476
ABK72094.1
Identified by match to protein family HMM PF00583.
  
     0.463
ABK70087.1
Identified by match to protein family HMM PF00582.
  
    0.462
ABK75465.1
Transcriptional regulator; Identified by match to protein family HMM PF00196.
 
  
 0.453
ABK75418.1
Carbohydrate kinase, PfkB, putative; Identified by match to protein family HMM PF00294.
  
    0.448
ABK75141.1
Identified by match to protein family HMM PF00903.
  
  
 0.434
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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