Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK69833.1 | ABK70530.1 | MSMEG_0071 | MSMEG_4770 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.738 |
ABK69833.1 | ABK70745.1 | MSMEG_0071 | MSMEG_6540 | Conserved hypothetical protein. | Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996. | 0.465 |
ABK69833.1 | ABK72685.1 | MSMEG_0071 | MSMEG_4771 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.804 |
ABK69833.1 | ABK72967.1 | MSMEG_0071 | MSMEG_2864 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.747 |
ABK69833.1 | ABK73798.1 | MSMEG_0071 | MSMEG_0137 | Conserved hypothetical protein. | Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996. | 0.543 |
ABK69833.1 | ABK74488.1 | MSMEG_0071 | MSMEG_0134 | Conserved hypothetical protein. | Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996. | 0.476 |
ABK69833.1 | ABK76047.1 | MSMEG_0071 | MSMEG_4255 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.410 |
ABK69833.1 | saeC | MSMEG_0071 | MSMEG_0046 | Conserved hypothetical protein. | Conserved hypothetical protein; May be involved in assembly of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Involved in DNA conjugation in recipient (MKD8) strain. | 0.937 |
ABK70530.1 | ABK69833.1 | MSMEG_4770 | MSMEG_0071 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.738 |
ABK70530.1 | ABK70745.1 | MSMEG_4770 | MSMEG_6540 | Conserved hypothetical protein. | Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996. | 0.726 |
ABK70530.1 | ABK71854.1 | MSMEG_4770 | MSMEG_5739 | Conserved hypothetical protein. | Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746. | 0.742 |
ABK70530.1 | ABK72685.1 | MSMEG_4770 | MSMEG_4771 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.947 |
ABK70530.1 | ABK72967.1 | MSMEG_4770 | MSMEG_2864 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.777 |
ABK70530.1 | ABK73798.1 | MSMEG_4770 | MSMEG_0137 | Conserved hypothetical protein. | Virulence factor mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996. | 0.711 |
ABK70530.1 | ABK73948.1 | MSMEG_4770 | MSMEG_5818 | Conserved hypothetical protein. | Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996. | 0.727 |
ABK70530.1 | ABK74488.1 | MSMEG_4770 | MSMEG_0134 | Conserved hypothetical protein. | Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996. | 0.726 |
ABK70530.1 | ABK76047.1 | MSMEG_4770 | MSMEG_4255 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.774 |
ABK70530.1 | saeC | MSMEG_4770 | MSMEG_0046 | Conserved hypothetical protein. | Conserved hypothetical protein; May be involved in assembly of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Involved in DNA conjugation in recipient (MKD8) strain. | 0.720 |
ABK70745.1 | ABK69833.1 | MSMEG_6540 | MSMEG_0071 | Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996. | Conserved hypothetical protein. | 0.465 |
ABK70745.1 | ABK70530.1 | MSMEG_6540 | MSMEG_4770 | Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996. | Conserved hypothetical protein. | 0.726 |
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