STRINGSTRING
ABK75543.1 ABK75543.1 ABK74589.1 ABK74589.1 ABK72776.1 ABK72776.1 pcaG pcaG ABK69580.1 ABK69580.1 ABK71145.1 ABK71145.1 ABK70024.1 ABK70024.1 ABK73356.1 ABK73356.1 pcaH pcaH ABK72784.1 ABK72784.1 ABK76062.1 ABK76062.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75543.1RemO protein; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494. (408 aa)    
Predicted Functional Partners:
ABK74589.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
    0.787
ABK72776.1
Toluate 1,2-dioxygenase beta subunit; Identified by match to protein family HMM PF00866.
  
  
 0.726
pcaG
Protocatechuate 3,4-dioxygenase, alpha subunit; Identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423.
  
  
 0.537
ABK69580.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.527
ABK71145.1
Fatty acid hydroxylase; Identified by match to protein family HMM PF04116.
   
 
 0.520
ABK70024.1
C-5 sterol desaturase.
   
 
 0.517
ABK73356.1
C-5 sterol desaturase.
   
 
 0.517
pcaH
Protocatechuate 3,4-dioxygenase, beta subunit; Identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422.
  
  
 0.510
ABK72784.1
C-5 sterol desaturase.
   
 
 0.508
ABK76062.1
Vanillate O-demethylase oxidoreductase; Identified by match to protein family HMM PF00111.
 
 
 0.453
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
Server load: low (28%) [HD]