STRINGSTRING
ABK74162.1 ABK74162.1 ABK74336.1 ABK74336.1 deaD deaD ABK72739.1 ABK72739.1 ABK70627.1 ABK70627.1 ABK76075.1 ABK76075.1 ABK71954.1 ABK71954.1 ABK71591.1 ABK71591.1 ABK71242.1 ABK71242.1 ABK72398.1 ABK72398.1 ABK70092.1 ABK70092.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK74162.1Identified by match to protein family HMM PF04954; match to protein family HMM PF08021. (225 aa)    
Predicted Functional Partners:
ABK74336.1
Probable acyltransferase; Identified by match to protein family HMM PF01757.
  
    0.822
deaD
ATP-dependent rna helicase, dead/deah box family protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
  
    0.820
ABK72739.1
FAD-binding 9, siderophore-interacting; Identified by match to protein family HMM PF04954; match to protein family HMM PF08021.
 
  
 0.801
ABK70627.1
2,3-dihydroxybenzoate-AMP ligase; Identified by match to protein family HMM PF00501.
 
  
 0.650
ABK76075.1
LprE protein.
  
    0.589
ABK71954.1
Putative non-ribosomal peptide synthetase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733.
  
  
 0.552
ABK71591.1
Periplasmic binding protein; Identified by match to protein family HMM PF01497.
 
  
 0.502
ABK71242.1
Periplasmic binding protein; Identified by match to protein family HMM PF01497.
 
  
 0.498
ABK72398.1
Amino acid adenylation; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.
  
  
 0.476
ABK70092.1
Ferric enterobactin transport system permease protein FepD; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.471
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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