Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK69749.1 | ABK75366.1 | MSMEG_5055 | MSMEG_5054 | NAD-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949. | Lipoprotein LpqZ; Identified by match to protein family HMM PF04069. | 0.894 |
ABK69749.1 | corA | MSMEG_5055 | MSMEG_5056 | NAD-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949. | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | 0.597 |
ABK69749.1 | purM | MSMEG_5055 | MSMEG_5798 | NAD-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949. | Phosphoribosylformylglycinamidine cyclo-ligase; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878. | 0.448 |
ABK74386.1 | corA | MSMEG_1414 | MSMEG_5056 | Amidinotransferase; Identified by match to protein family HMM PF02274. | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | 0.448 |
ABK74487.1 | corA | MSMEG_0461 | MSMEG_5056 | CinZ protein; Identified by match to protein family HMM PF01205. | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | 0.414 |
ABK75366.1 | ABK69749.1 | MSMEG_5054 | MSMEG_5055 | Lipoprotein LpqZ; Identified by match to protein family HMM PF04069. | NAD-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949. | 0.894 |
ABK75366.1 | corA | MSMEG_5054 | MSMEG_5056 | Lipoprotein LpqZ; Identified by match to protein family HMM PF04069. | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | 0.619 |
corA | ABK69749.1 | MSMEG_5056 | MSMEG_5055 | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | NAD-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949. | 0.597 |
corA | ABK74386.1 | MSMEG_5056 | MSMEG_1414 | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | Amidinotransferase; Identified by match to protein family HMM PF02274. | 0.448 |
corA | ABK74487.1 | MSMEG_5056 | MSMEG_0461 | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | CinZ protein; Identified by match to protein family HMM PF01205. | 0.414 |
corA | ABK75366.1 | MSMEG_5056 | MSMEG_5054 | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | Lipoprotein LpqZ; Identified by match to protein family HMM PF04069. | 0.619 |
corA | mgtA | MSMEG_5056 | MSMEG_1113 | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | Glycosyl transferase; Catalyzes the addition of a mannose residue from GDP-D- mannose to GlcAGroAc2 to generate 1,2-di-O-C16/C18:1-(alpha-D- mannopyranosyl)-(1-4)-(alpha-D-glucopyranosyluronic acid)-(1-3)- glycerol(ManGlcAGroAc2); Belongs to the glycosyltransferase group 1 family. Glycosyltransferase 4 subfamily. | 0.460 |
corA | purM | MSMEG_5056 | MSMEG_5798 | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | Phosphoribosylformylglycinamidine cyclo-ligase; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878. | 0.404 |
mgtA | corA | MSMEG_1113 | MSMEG_5056 | Glycosyl transferase; Catalyzes the addition of a mannose residue from GDP-D- mannose to GlcAGroAc2 to generate 1,2-di-O-C16/C18:1-(alpha-D- mannopyranosyl)-(1-4)-(alpha-D-glucopyranosyluronic acid)-(1-3)- glycerol(ManGlcAGroAc2); Belongs to the glycosyltransferase group 1 family. Glycosyltransferase 4 subfamily. | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | 0.460 |
purM | ABK69749.1 | MSMEG_5798 | MSMEG_5055 | Phosphoribosylformylglycinamidine cyclo-ligase; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878. | NAD-dependent malic enzyme; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949. | 0.448 |
purM | corA | MSMEG_5798 | MSMEG_5056 | Phosphoribosylformylglycinamidine cyclo-ligase; Identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878. | Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. | 0.404 |