STRINGSTRING
ABK75359.1 ABK75359.1 ABK73940.1 ABK73940.1 mdcB mdcB mdcC mdcC ABK74614.1 ABK74614.1 ABK75551.1 ABK75551.1 ABK72876.1 ABK72876.1 purD purD ABK69826.1 ABK69826.1 ABK72354.1 ABK72354.1 ABK70868.1 ABK70868.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75359.1malyl-CoA lyase; Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. (318 aa)    
Predicted Functional Partners:
ABK73940.1
3-hydroxy-3-methylglutaryl-CoA lyase; Identified by match to protein family HMM PF00682.
     
 0.825
mdcB
triphosphoribosyl-dephospho-CoA synthase MdcB; Identified by match to protein family HMM PF01874; match to protein family HMM TIGR03132.
 
  
 0.654
mdcC
Malonate decarboxylase acyl carrier protein; Identified by match to protein family HMM PF06857; match to protein family HMM TIGR03130.
  
  
 0.637
ABK74614.1
Mg/Co/Ni transporter MgtE; Identified by match to protein family HMM PF00571; match to protein family HMM PF03448.
  
    0.627
ABK75551.1
Integral membrane protein; Identified by match to protein family HMM PF06210.
  
    0.624
ABK72876.1
Formyl transferase; Identified by match to protein family HMM PF00551; match to protein family HMM PF02911.
     
 0.599
purD
Phosphoribosylamine--glycine ligase; Identified by match to protein family HMM PF01071; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family.
  
  
 0.590
ABK69826.1
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.581
ABK72354.1
Siderophore binding protein; Identified by match to protein family HMM PF00132.
      
 0.580
ABK70868.1
Lipoprotein; Identified by match to protein family HMM PF01882.
   
  
 0.576
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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