Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70241.1 | ABK70429.1 | MSMEG_5081 | MSMEG_5685 | Conserved hypothetical protein. | DNA-binding protein. | 0.519 |
ABK70241.1 | ABK71713.1 | MSMEG_5081 | MSMEG_6192 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.773 |
ABK70241.1 | ABK73545.1 | MSMEG_5081 | MSMEG_5083 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.555 |
ABK70241.1 | ABK74298.1 | MSMEG_5081 | MSMEG_3754 | Conserved hypothetical protein. | TPR-repeat-containing protein. | 0.529 |
ABK70241.1 | ABK74317.1 | MSMEG_5081 | MSMEG_6171 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.555 |
ABK70241.1 | ABK76208.1 | MSMEG_5081 | MSMEG_6092 | Conserved hypothetical protein. | Lsr2 protein. | 0.528 |
ABK70241.1 | folP | MSMEG_5081 | MSMEG_5085 | Conserved hypothetical protein. | Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives. | 0.525 |
ABK70241.1 | gpgS | MSMEG_5081 | MSMEG_5084 | Conserved hypothetical protein. | Glycosyl transferase, group 2 family protein; Involved in the biosynthesis of 6-O-methylglucose lipopolysaccarides (MGLPs). Catalyzes the transfer of a glucose (Glc) moiety from uridine diphosphate (UDP-Glc) to the position 2 of 3-phospho-D-glycerate (3- PGA) to form glucosyl-3-phosphoglycerate (GPG). It can use UDP-glucose, ADP-glucose and GDP-glucose as donor substrates with decreasing affinity, and 3-PGA as an acceptor. D-glycerate could only be the acceptor with ADP- glucose and at a very low rate. | 0.581 |
ABK70241.1 | mtrB | MSMEG_5081 | MSMEG_1875 | Conserved hypothetical protein. | Sensor histidine kinase MtrB; Member of the two-component regulatory system MtrA/MtrB. Probably functions as a membrane-associated protein kinase that phosphorylates MtrA in response to environmental signals (By similarity). MtrB may be active only at septa where it promotes MtrA phosphorylation and MtrA regulon expression, probably playing a role in cell division. | 0.498 |
ABK70241.1 | tag | MSMEG_5081 | MSMEG_5082 | Conserved hypothetical protein. | DNA-3-methyladenine glycosylase I; Identified by match to protein family HMM PF03352; match to protein family HMM TIGR00624. | 0.787 |
ABK70429.1 | ABK70241.1 | MSMEG_5685 | MSMEG_5081 | DNA-binding protein. | Conserved hypothetical protein. | 0.519 |
ABK70429.1 | ABK71713.1 | MSMEG_5685 | MSMEG_6192 | DNA-binding protein. | Conserved hypothetical protein. | 0.405 |
ABK70429.1 | ABK73545.1 | MSMEG_5685 | MSMEG_5083 | DNA-binding protein. | Conserved hypothetical protein. | 0.562 |
ABK70429.1 | ABK74298.1 | MSMEG_5685 | MSMEG_3754 | DNA-binding protein. | TPR-repeat-containing protein. | 0.452 |
ABK70429.1 | ABK74317.1 | MSMEG_5685 | MSMEG_6171 | DNA-binding protein. | Conserved hypothetical protein. | 0.446 |
ABK70429.1 | ABK76208.1 | MSMEG_5685 | MSMEG_6092 | DNA-binding protein. | Lsr2 protein. | 0.412 |
ABK71713.1 | ABK70241.1 | MSMEG_6192 | MSMEG_5081 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.773 |
ABK71713.1 | ABK70429.1 | MSMEG_6192 | MSMEG_5685 | Conserved hypothetical protein. | DNA-binding protein. | 0.405 |
ABK71713.1 | ABK74317.1 | MSMEG_6192 | MSMEG_6171 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.492 |
ABK71713.1 | ABK76208.1 | MSMEG_6192 | MSMEG_6092 | Conserved hypothetical protein. | Lsr2 protein. | 0.550 |
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